miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions




selected mature miRNA sequence: TTGCATAGTCACAAAAATGATC

selected species: Danio rerio



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TTGCATAGTCACAAAAATGATC CATTTTTGTGATTTGCAGCT down 1 1


Secondary structure

TAGGTCCCTGGACGTAGCACACCTCCCAGTGTCATTTTTGTGATTTGCAGCTAGTAGTCTGGGTCCAGTTGCATAGTCACAAAAATGATCATTGGTAGGTGTGAGTGCAGCAGGAGTGA
------------------------------GTCATTTTTGTGATTTGCAG 	1
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCAT 	1
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCA 	3
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATC 	17
--------------------------------------------------------------------TTGCATAGTCACAAAAATGA 	2
---------------------------------------------------------------------TGCATAGTCACAAAAATGATC 	1


Overlaps with: MNEST034326
Overlaps with miRBase pre-miRNAs: dre-mir-153c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TTGCATAGTCACAAAAATGATC CATTTTTGTGATTTGCAGCT down 1 1


Secondary structure

TAGGTCCCTGGACGTAGCACACCTCCCAGTGTCATTTTTGTGATTTGCAGCTAGTAGTCTGGGTCCAGTTGCATAGTCACAAAAATGATCATTGGTAGGTGTGAGTGCAGCAGGAGTGA
------------------------------GTCATTTTTGTGATTTGCAGC 	3
------------------------------GTCATTTTTGTGATTTGCAGCT 	6
------------------------------GTCATTTTTGTGATTTGCAG 	3
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCATT 	1
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCAT 	21
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATC 	375
--------------------------------------------------------------------TTGCATAGTCACAAAAATGAT 	7
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCA 	21
--------------------------------------------------------------------TTGCATAGTCACAAAAATGA 	3
---------------------------------------------------------------------TGCATAGTCACAAAAATGATCAT 	2
---------------------------------------------------------------------TGCATAGTCACAAAAATGATC 	1
----------------------------------------------------------------------GCATAGTCACAAAAATGATC 	1
--------------------------------------------------------------------------------------------TGGTAGGTGTGAGTGCAGCAG 	1


Overlaps with: MNEST034326
Overlaps with miRBase pre-miRNAs: dre-mir-153c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540643 TTGCATAGTCACAAAAATGATC CATTTTTGTGATTTGCAGCT down 1 1


Secondary structure

TAGGTCCCTGGACGTAGCACACCTCCCAGTGTCATTTTTGTGATTTGCAGCTAGTAGTCTGGGTCCAGTTGCATAGTCACAAAAATGATCATTGGTAGGTGTGAGTGCAGCAGGAGTGA
------------------------------GTCATTTTTGTGATTTGCAGCT 	11
------------------------------GTCATTTTTGTGATTTGCAG 	1
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCAT 	18
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATC 	48
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCATT 	1
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCA 	16
--------------------------------------------------------------------TTGCATAGTCACAAAAATGAT 	6
---------------------------------------------------------------------TGCATAGTCACAAAAATGATCAT 	1


Overlaps with: MNEST034326
Overlaps with miRBase pre-miRNAs: dre-mir-153c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540646 TTGCATAGTCACAAAAATGATC CATTTTTGTGATTTGCAGCT down 1 1


Secondary structure

TAGGTCCCTGGACGTAGCACACCTCCCAGTGTCATTTTTGTGATTTGCAGCTAGTAGTCTGGGTCCAGTTGCATAGTCACAAAAATGATCATTGGTAGGTGTGAGTGCAGCAGGAGTGA
---------GGACGTAGCACACCTCCCAGT 	2
------------------------------GTCATTTTTGTGATTTGCAGCTA 	1
------------------------------GTCATTTTTGTGATTTGCAGCT 	65
------------------------------GTCATTTTTGTGATTTGCAG 	43
------------------------------GTCATTTTTGTGATTTGCAGC 	73
-------------------------------TCATTTTTGTGATTTGCAG 	1
-------------------------------TCATTTTTGTGATTTGCAGCTAG 	1
-------------------------------TCATTTTTGTGATTTGCAGCT 	8
-------------------------------------------------------------------GTTGCATAGTCACAAAAATGAT 	1
-------------------------------------------------------------------GTTGCATAGTCACAAAAATG 	1
-------------------------------------------------------------------GTTGCATAGTCACAAAAATGATC 	3
--------------------------------------------------------------------TTGCATAGTCACAAAAATG 	7
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCATT 	15
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCAT 	655
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATCA 	450
--------------------------------------------------------------------TTGCATAGTCACAAAAATGATC 	5559
--------------------------------------------------------------------TTGCATAGTCACAAAAATGAT 	129
--------------------------------------------------------------------TTGCATAGTCACAAAAATGA 	15
---------------------------------------------------------------------TGCATAGTCACAAAAATGATCA 	4
---------------------------------------------------------------------TGCATAGTCACAAAAATGATC 	5
---------------------------------------------------------------------TGCATAGTCACAAAAATGATCATT 	8
---------------------------------------------------------------------TGCATAGTCACAAAAATGATCAT 	27
----------------------------------------------------------------------GCATAGTCACAAAAATGAT 	1
-----------------------------------------------------------------------CATAGTCACAAAAATGATC 	1
-----------------------------------------------------------------------CATAGTCACAAAAATGATCATT 	6
--------------------------------------------------------------------------------------------TGGTAGGTGTGAGTGCAGCAG 	2


Overlaps with: MNEST034326
Overlaps with miRBase pre-miRNAs: dre-mir-153c
HuntMi prediction: true miRNA