miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTGCATAGTCACAAAAGTGATC

selected species: Danio rerio



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TTGCATAGTCACAAAAGTGATC CATTTTTGTGATGTTGCAGCT down 3 0


Secondary structure

GCTAATTAGCGGTTGCCAGTGTCATTTTTGTGATGTTGCAGCTAGTTATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTATCTCCT
--------------------GTCATTTTTGTGATGTTGCAGCT 	1
--------------------GTCATTTTTGTGATGTTGCAGC 	1
--------------------GTCATTTTTGTGATGTTGCAG 	2
---------------------TCATTTTTGTGATGTTGCAGCT 	1
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCAT 	1
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCA 	1
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATC 	28
-----------------------------------------------------------TTGCATAGTCACAAAAGTGA 	2
------------------------------------------------------------TGCATAGTCACAAAAGTGATC 	1

Overlaps with: MNEST034324
Overlaps with miRBase pre-miRNAs: dre-mir-153a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TTGCATAGTCACAAAAGTGATC CATTTTTGTGATGTTGCAGCT down 3 0


Secondary structure

GCTAATTAGCGGTTGCCAGTGTCATTTTTGTGATGTTGCAGCTAGTTATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTATCTCCT
--------------------GTCATTTTTGTGATGTTGCAGC 	4
--------------------GTCATTTTTGTGATGTTGCAG 	1
-----------------------ATTTTTGTGATGTTGCAGCTAG 	5
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCAT 	2
-----------------------------------------------------------TTGCATAGTCACAAAAGTGAT 	2
-----------------------------------------------------------TTGCATAGTCACAAAAGTGA 	1
-----------------------------------------------------------TTGCATAGTCACAAAAGTG 	1
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCA 	3
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATC 	74
------------------------------------------------------------TGCATAGTCACAAAAGTGATC 	1

Overlaps with: MNEST034324
Overlaps with miRBase pre-miRNAs: dre-mir-153a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540642 TTGCATAGTCACAAAAGTGATC CATTTTTGTGATGTTGCAGCT down 3 0


Secondary structure

GCTAATTAGCGGTTGCCAGTGTCATTTTTGTGATGTTGCAGCTAGTTATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTATCTCCT
--------------------GTCATTTTTGTGATGTTGCAGCTAGT 	2
--------------------GTCATTTTTGTGATGTTGCAGCT 	82
--------------------GTCATTTTTGTGATGTTGCAGC 	10
--------------------GTCATTTTTGTGATGTTGCAG 	7
--------------------GTCATTTTTGTGATGTTGCA 	2
--------------------GTCATTTTTGTGATGTTGC 	1
---------------------TCATTTTTGTGATGTTGCAGCT 	5
---------------------TCATTTTTGTGATGTTGCAGC 	1
-----------------------ATTTTTGTGATGTTGCAGCTAGT 	1
------------------------TTTTTGTGATGTTGCAGCTAGTTATA 	1
------------------------TTTTTGTGATGTTGCAGCTAGTT 	1
------------------------TTTTTGTGATGTTGCAGCTAGT 	1
----------------------------TGTGATGTTGCAGCTAGTTATAT 	1
----------------------------------------------------AGCCCAGTTGCATAGTCACAAAAGTG 	1
------------------------------------------------------CCCAGTTGCATAGTCACAAAAGTGAT 	1
--------------------------------------------------------CAGTTGCATAGTCACAAAAGTGAT 	1
--------------------------------------------------------CAGTTGCATAGTCACAAAAGT 	2
----------------------------------------------------------GTTGCATAGTCACAAAAGTGATCAT 	1
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCAT 	50
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCA 	175
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATC 	1402
-----------------------------------------------------------TTGCATAGTCACAAAAGTGAT 	190
-----------------------------------------------------------TTGCATAGTCACAAAAGTGA 	3
------------------------------------------------------------TGCATAGTCACAAAAGTGATCAT 	8
------------------------------------------------------------TGCATAGTCACAAAAGTGATCA 	44
------------------------------------------------------------TGCATAGTCACAAAAGTGATC 	92
------------------------------------------------------------TGCATAGTCACAAAAGTGAT 	4
-------------------------------------------------------------GCATAGTCACAAAAGTGATCA 	1
-------------------------------------------------------------GCATAGTCACAAAAGTGATC 	1
--------------------------------------------------------------CATAGTCACAAAAGTGATCATT 	5
--------------------------------------------------------------CATAGTCACAAAAGTGATCAT 	4
--------------------------------------------------------------CATAGTCACAAAAGTGATCA 	2
--------------------------------------------------------------CATAGTCACAAAAGTGATC 	2

Overlaps with: MNEST034324
Overlaps with miRBase pre-miRNAs: dre-mir-153a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540643 TTGCATAGTCACAAAAGTGATC CATTTTTGTGATGTTGCAGCT down 3 0


Secondary structure

GCTAATTAGCGGTTGCCAGTGTCATTTTTGTGATGTTGCAGCTAGTTATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTATCTCCT
--------------------GTCATTTTTGTGATGTTGCAGCT 	13
--------------------GTCATTTTTGTGATGTTGCAGC 	2
--------------------GTCATTTTTGTGATGTTGCA 	2
-----------------------ATTTTTGTGATGTTGCAGCTA 	2
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCAT 	28
-----------------------------------------------------------TTGCATAGTCACAAAAGTGAT 	10
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCA 	48
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATC 	203
------------------------------------------------------------TGCATAGTCACAAAAGTGATCAT 	4
------------------------------------------------------------TGCATAGTCACAAAAGTGATCA 	3
------------------------------------------------------------TGCATAGTCACAAAAGTGATC 	1

Overlaps with: MNEST034324
Overlaps with miRBase pre-miRNAs: dre-mir-153a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540646 TTGCATAGTCACAAAAGTGATC CATTTTTGTGATGTTGCAGCT down 3 0


Secondary structure

GCTAATTAGCGGTTGCCAGTGTCATTTTTGTGATGTTGCAGCTAGTTATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTATCTCCT
--------------------GTCATTTTTGTGATGTTGCAGCT 	18
--------------------GTCATTTTTGTGATGTTGCAGC 	20
--------------------GTCATTTTTGTGATGTTGCAG 	33
--------------------GTCATTTTTGTGATGTTGC 	1
--------------------GTCATTTTTGTGATGTTGCA 	4
---------------------TCATTTTTGTGATGTTGCAGCT 	4
---------------------TCATTTTTGTGATGTTGCAGC 	3
-----------------------ATTTTTGTGATGTTGCAGCT 	1
-----------------------ATTTTTGTGATGTTGCAGC 	1
-----------------------ATTTTTGTGATGTTGCAGCTAGT 	1
-----------------------ATTTTTGTGATGTTGCAGCTAG 	18
-----------------------ATTTTTGTGATGTTGCAGCTA 	2
------------------------TTTTTGTGATGTTGCAGCT 	1
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCAT 	287
-----------------------------------------------------------TTGCATAGTCACAAAAGTGAT 	55
-----------------------------------------------------------TTGCATAGTCACAAAAGTGA 	5
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATC 	2422
-----------------------------------------------------------TTGCATAGTCACAAAAGTG 	3
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCATT 	5
-----------------------------------------------------------TTGCATAGTCACAAAAGTGATCA 	144
------------------------------------------------------------TGCATAGTCACAAAAGTGATCAT 	39
------------------------------------------------------------TGCATAGTCACAAAAGTGATCA 	1
------------------------------------------------------------TGCATAGTCACAAAAGTGATC 	4
--------------------------------------------------------------CATAGTCACAAAAGTGATCAT 	4
--------------------------------------------------------------CATAGTCACAAAAGTGATCATT 	1

Overlaps with: MNEST034324
Overlaps with miRBase pre-miRNAs: dre-mir-153a
HuntMi prediction: true miRNA