miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTGCCGATTCCACCCATTCCTA

selected species: Glycine max



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM852280 TTGCCGATTCCACCCATTCCTA GGAGATGGGAGGGTCGGTAAAG down 1 2


Secondary structure

TCATATTCATAGAGAGAGAAAGGGAAAGGGAGAAGAGCTTGAGGAAGTGATGGGAGATGGGAGGGTCGGTAAAGAATATATCTGAGACTCGACTCAATCTCGATCTCTCTCAGTGTTGTGTTGTTTTGTTTATCCTTTTGCCGATTCCACCCATTCCTATGATTTCCTTCGGTTCCTCTCTTTCCACTCTCCTCTCCGCTCTTTCCTC
-----------------------------GAGAAGAGCTTGAGGAAGTGATG 	23
-----------------------------------------------TGATGGGAGATGGGAGGGTCGG 	2
----------------------------------------------------GGAGATGGGAGGGTCGGTAAAGA 	18
----------------------------------------------------GGAGATGGGAGGGTCGGTA 	15
-----------------------------------------------------GAGATGGGAGGGTCGGTAAAG 	4
-----------------------------------------------------GAGATGGGAGGGTCGGTAAA 	1
------------------------------------------------------AGATGGGAGGGTCGGTAAAG 	1
----------------------------------------------------------------------------------------------------------------------------------------TTTGCCGATTCCACCCATTCCTA 	1
----------------------------------------------------------------------------------------------------------------------------------------TTTGCCGATTCCACCCATTCCTA 	1
-----------------------------------------------------------------------------------------------------------------------------------------TTGCCGATTCCACCCATTCCTA 	2127
-----------------------------------------------------------------------------------------------------------------------------------------TTGCCGATTCCACCCATTCCT 	29
-----------------------------------------------------------------------------------------------------------------------------------------TTGCCGATTCCACCCATTCC 	13
-----------------------------------------------------------------------------------------------------------------------------------------TTGCCGATTCCACCCATTC 	13
------------------------------------------------------------------------------------------------------------------------------------------TGCCGATTCCACCCATTCCTAT 	2
-------------------------------------------------------------------------------------------------------------------------------------------GCCGATTCCACCCATTCCTAT 	1
-------------------------------------------------------------------------------------------------------------------------------------------GCCGATTCCACCCATTCCTA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTTCCTTCGGTTCCTCT 	9
---------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTTCCTTCGGTTCCTCTC 	7

Overlaps with: MNEST048628 MNEST054765
Overlaps with miRBase pre-miRNAs: gma-MIR2118a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM852280 TTGCCGATTCCACCCATTCCTA GGAGATGGGAGGGTCGGTAAAG down 1 2


Secondary structure

AGAGTGAGAAAGGGAAAGGAAGAAGAGCTTGAGGAAGTGATGGGAGATGGGAGGGTCGGTAAAGGATAACAGCGTCTCTATGATTAATTGTTGTGTTGTTTATTCTTTTGCCGATTCCACCCATTCCTATGATTTTCTTTGGTTCCTTTCTTTCCACTCTCCTCTCCG
-------------------------------------TGATGGGAGATGGGAGGGTCGG 	2
------------------------------------------GGAGATGGGAGGGTCGGTA 	15
-------------------------------------------GAGATGGGAGGGTCGGTAAAG 	4
-------------------------------------------GAGATGGGAGGGTCGGTAAA 	1
--------------------------------------------AGATGGGAGGGTCGGTAAAG 	1
----------------------------------------------------------------------------------------------------------TTTGCCGATTCCACCCATTCCTA 	1
----------------------------------------------------------------------------------------------------------TTTGCCGATTCCACCCATTCCTA 	1
-----------------------------------------------------------------------------------------------------------TTGCCGATTCCACCCATTCCTA 	2127
-----------------------------------------------------------------------------------------------------------TTGCCGATTCCACCCATTCCT 	29
-----------------------------------------------------------------------------------------------------------TTGCCGATTCCACCCATTCC 	13
-----------------------------------------------------------------------------------------------------------TTGCCGATTCCACCCATTC 	13
------------------------------------------------------------------------------------------------------------TGCCGATTCCACCCATTCCTAT 	2
-------------------------------------------------------------------------------------------------------------GCCGATTCCACCCATTCCTAT 	1
-------------------------------------------------------------------------------------------------------------GCCGATTCCACCCATTCCTA 	1

Overlaps with: MNEST040642
Overlaps with miRBase pre-miRNAs: gma-MIR2118b gso-MIR2218
HuntMi prediction: true miRNA