miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTGCGTAGGCCTTTGCTTCGA

selected species: Caenorhabditis elegans



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TTGCGTAGGCCTTTGCTTCGA GCAGCAATATCCTCCGCAAAA up 5 0


Secondary structure

ATGAATAGTTCCCTCGTGGCTCGCGAGAGTATTGCGTAGGCCTTTGCTTCGAGAGAGAAGCTTCAGTTCGCAGCAATATCCTCCGCAAAACTTTCCCCGGCTATGCAAAAAATGGTAA
-------------------------------TTGCGTAGGCCTTTGCTTCGAGA 	7
-------------------------------TTGCGTAGGCCTTTGCTTCGA 	109
-------------------------------TTGCGTAGGCCTTTGCTTCGAG 	1

Overlaps with: MNEST038346
Overlaps with miRBase pre-miRNAs: cel-mir-242
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TTGCGTAGGCCTTTGCTTCGA GCAGCAATATCCTCCGCAAAA up 5 0


Secondary structure

ATGAATAGTTCCCTCGTGGCTCGCGAGAGTATTGCGTAGGCCTTTGCTTCGAGAGAGAAGCTTCAGTTCGCAGCAATATCCTCCGCAAAACTTTCCCCGGCTATGCAAAAAATGGTAA
------------------------------ATTGCGTAGGCCTTTGCTTCGA 	1
-------------------------------TTGCGTAGGCCTTTGCTTCGA 	18
---------------------------------------------------------------------GCAGCAATATCCTCCGCAAAA 	1

Overlaps with: MNEST038346
Overlaps with miRBase pre-miRNAs: cel-mir-242
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 TTGCGTAGGCCTTTGCTTCGA GCAGCAATATCCTCCGCAAAA up 5 0


Secondary structure

ATGAATAGTTCCCTCGTGGCTCGCGAGAGTATTGCGTAGGCCTTTGCTTCGAGAGAGAAGCTTCAGTTCGCAGCAATATCCTCCGCAAAACTTTCCCCGGCTATGCAAAAAATGGTAA
------------------------------ATTGCGTAGGCCTTTGCTTCGA 	1
-------------------------------TTGCGTAGGCCTTTGCTTCGA 	26

Overlaps with: MNEST038346
Overlaps with miRBase pre-miRNAs: cel-mir-242
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM297751-9445 TTGCGTAGGCCTTTGCTTCGA GCAGCAATATCCTCCGCAAAA up 5 0


Secondary structure

ATGAATAGTTCCCTCGTGGCTCGCGAGAGTATTGCGTAGGCCTTTGCTTCGAGAGAGAAGCTTCAGTTCGCAGCAATATCCTCCGCAAAACTTTCCCCGGCTATGCAAAAAATGGTAA
------------------------------ATTGCGTAGGCCTTTGCTTCGA 	2
-------------------------------TTGCGTAGGCCTTTGCTTCGAG 	8
-------------------------------TTGCGTAGGCCTTTGCTTCGA 	409
-------------------------------TTGCGTAGGCCTTTGCTTC 	1
-------------------------------TTGCGTAGGCCTTTGCTTCGAGA 	7
--------------------------------TGCGTAGGCCTTTGCTTCGA 	2
----------------------------------CGTAGGCCTTTGCTTCGAGA 	1
-------------------------------------------------------------------TCGCAGCAATATCCTCCGCAA 	1
---------------------------------------------------------------------GCAGCAATATCCTCCGCAAAA 	1

Overlaps with: MNEST038346
Overlaps with miRBase pre-miRNAs: cel-mir-242
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM297752-9446 TTGCGTAGGCCTTTGCTTCGA GCAGCAATATCCTCCGCAAAA up 5 0


Secondary structure

ATGAATAGTTCCCTCGTGGCTCGCGAGAGTATTGCGTAGGCCTTTGCTTCGAGAGAGAAGCTTCAGTTCGCAGCAATATCCTCCGCAAAACTTTCCCCGGCTATGCAAAAAATGGTAA
------------------------------ATTGCGTAGGCCTTTGCTTCGA 	1
-------------------------------TTGCGTAGGCCTTTGCTTCGA 	459
-------------------------------TTGCGTAGGCCTTTGCTTCGAG 	2
-------------------------------TTGCGTAGGCCTTTGCTTCG 	1
-------------------------------TTGCGTAGGCCTTTGCTTCGAGA 	13
--------------------------------TGCGTAGGCCTTTGCTTCGA 	1
---------------------------------GCGTAGGCCTTTGCTTCGA 	1
---------------------------------------------------------------------GCAGCAATATCCTCCGCAAAA 	1

Overlaps with: MNEST038346
Overlaps with miRBase pre-miRNAs: cel-mir-242
HuntMi prediction: true miRNA