miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTGGACTGAAGGGAGCTCC

selected species: Vitis vinifera

19 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458927	TTGGACTGAAGGGAGCTCCC	GAGCTCCTTTTAGTCCAATA	down	2	0

Secondary structure

GGAACAGCTGAAGAGCTCCTTTTAGTCCAATAAAGAGGGCTGAGGGGCGGCCAGAGCTGCCATCTCATGCACTTGGCTATGCTTATTCTTTTCTCAATCAATTCGGTTCGAGTATGGCTGTGGAGTGACAAATGCTAAGTTTAGCCTGATGCATGACATGGGAGCAACTCCTCCGCACGCTTTGCCCACTCATTGGACTGAAGGGAGCTCCCAGGGCAGAT
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	101
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458927	TTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCAGTCCACTC	down	2	0

Secondary structure

TGGGTGGGTTCCTTGATGGTTTACATTGAAGAGAGCTTTCTTCAGTCCACTCATGGGTGGCAGTAGGATTGAATTAGCTGCCGACTCATTCATCCAAATACTGTGTTAAGGACTACCCAGTAAATGATTGAATGATGCGGGAGACAAATTGGATCTTAAGCTCCCTGTGCTTGGACTGAAGGGAGCTCCCTTCACTGCAATCTTATCCAAATCTGTCTT
----------------------------------------------------ATGGGTGGCAGTAGGATTGAAT 	1
---------------------------------------------------------------------------AGCTGCCGACTCATTCATCC 	4
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAAAT 	3
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAAA 	9
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAA 	31
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACA 	8
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGAC 	1
-------------------------------------------------------------------------------------------------------------------------------TTGAATGATGCGGGAGACAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	29
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	40
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	77
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	101
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

Overlaps with: MNEST041636 MNEST054844
Overlaps with miRBase pre-miRNAs: vvi-MIR319c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458927	TTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCAGTCCACTC	down	2	0

Secondary structure

TGGGCCTGTGTATTATGAGAAGTGGTTTAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGTTAGGGGTTTGGATTAGCTGCCGACTCATTCATTCAAACACAGTAGAATGGAAATGGAGTTTACTACTGTGAATGTGTGAATGATGCGGGAGGTAAATTTCATCCTTTTCTTGTCTGTGCTTGGACTGAAGGGAGCTCCCTTCTACTGTTTTCTTCATGTTTACCCTTT
--------------------------------GAGCTTCCTTCAGTCCACTC 	1
----------------------------------------------------------------------------AGCTGCCGACTCATTCATTCA 	1
----------------------------------------------------------------------------AGCTGCCGACTCATTCATTC 	1
----------------------------------------------------------------------------------------------------------------------------------------TGTGAATGATGCGGGAGGTAA 	10
------------------------------------------------------------------------------------------------------------------------------------------TGAATGATGCGGGAGGTAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	29
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	40
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	77
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	101
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

Overlaps with: MNEST041638 MNEST054846
Overlaps with miRBase pre-miRNAs: vvi-MIR319f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Vitis vinifera	GSM458927	TTGGACTGAAGGGAGCTCCC	GAGCTCTCTTTAGTCCAGTC	down	1	0

Secondary structure

AGTGATACAGTGGGAGGGTTTTGTGGAAGAAGGAGCTCTCTTTAGTCCAGTCCGAGACAGCTTCAAGGCTGATACGTGGCTGCTGACTCGTTGCTTCAAGAACTCATCACATAGGCCTGGAAAAGATGGATGGTTTTTTGATCCAACGATGCAGGAGCTGCGTTCAGTTATGGCTGTCACGTCTTGGACTGAAGGGAGCTCCCTTGTATTCCACAGCACTCAATGATCTTGT
--------------------------------------------------------------------------------------------------------------------------------------------ATCCAACGATGCAGGAGCTGCGT 	1
--------------------------------------------------------------------------------------------------------------------------------------------ATCCAACGATGCAGGAGCTGCG 	22
--------------------------------------------------------------------------------------------------------------------------------------------ATCCAACGATGCAGGAGCTGC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------ACGATGCAGGAGCTGCGTTCAGT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	29
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	40
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	77
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	101
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

Overlaps with: MNEST041635 MNEST054843
Overlaps with miRBase pre-miRNAs: vvi-MIR319b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Vitis vinifera	GSM458930-2718	TTGGACTGAAGGGAGCTCCC	GAGCTCCTTTTAGTCCAATA	down	2	0

Secondary structure

GGAACAGCTGAAGAGCTCCTTTTAGTCCAATAAAGAGGGCTGAGGGGCGGCCAGAGCTGCCATCTCATGCACTTGGCTATGCTTATTCTTTTCTCAATCAATTCGGTTCGAGTATGGCTGTGGAGTGACAAATGCTAAGTTTAGCCTGATGCATGACATGGGAGCAACTCCTCCGCACGCTTTGCCCACTCATTGGACTGAAGGGAGCTCCCAGGGCAGAT
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	20
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	1472
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	41
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	7

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Vitis vinifera	GSM458930-2718	TTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCAGTCCACTC	down	2	0

Secondary structure

TGGGTGGGTTCCTTGATGGTTTACATTGAAGAGAGCTTTCTTCAGTCCACTCATGGGTGGCAGTAGGATTGAATTAGCTGCCGACTCATTCATCCAAATACTGTGTTAAGGACTACCCAGTAAATGATTGAATGATGCGGGAGACAAATTGGATCTTAAGCTCCCTGTGCTTGGACTGAAGGGAGCTCCCTTCACTGCAATCTTATCCAAATCTGTCTT
---------------------------------------------------------------------------AGCTGCCGACTCATTCATCC 	11
----------------------------------------------------------------------------------------------------------------------------TGATTGAATGATGCGGGAGAC 	1
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAAAT 	34
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAAA 	50
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAA 	281
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACA 	97
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGAC 	25
-------------------------------------------------------------------------------------------------------------------------------TTGAATGATGCGGGAGACAAAT 	1
-------------------------------------------------------------------------------------------------------------------------------TTGAATGATGCGGGAGACAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTGGACTGAAGGGAGCTC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	95
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	218
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	11
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1376
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	1472
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	41
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTT 	6
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	18
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	1

Overlaps with: MNEST041636 MNEST054844
Overlaps with miRBase pre-miRNAs: vvi-MIR319c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Vitis vinifera	GSM458930-2718	TTTGGACTGAAGGGAGCTCCT	GGGTTCCTTTGCAGCCCAAAAC	down	1	1

Secondary structure

CTGCAGAAATGGGGGTTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTCCTAGTTCTTCT
---------------------------------------------------------------------------TTTTGGACTGAAGGGAGCTCCT 	9
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	2103
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCC 	38
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTC 	2
-----------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCT 	127
-----------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	41
------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCTAG 	11
------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCTA 	1
------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCT 	4

Overlaps with: MNEST008295
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Vitis vinifera	GSM458930-2718	TTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCAGTCCACTC	down	2	0

Secondary structure

TGGGCCTGTGTATTATGAGAAGTGGTTTAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGTTAGGGGTTTGGATTAGCTGCCGACTCATTCATTCAAACACAGTAGAATGGAAATGGAGTTTACTACTGTGAATGTGTGAATGATGCGGGAGGTAAATTTCATCCTTTTCTTGTCTGTGCTTGGACTGAAGGGAGCTCCCTTCTACTGTTTTCTTCATGTTTACCCTTT
----------------------------------------------------------------------------AGCTGCCGACTCATTCATTCA 	1
----------------------------------------------------------------------------------------------------------------------------------------TGTGAATGATGCGGGAGGTAAA 	1
----------------------------------------------------------------------------------------------------------------------------------------TGTGAATGATGCGGGAGGTAA 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTGGACTGAAGGGAGCTC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	95
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	218
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	11
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1376
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	1472
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTT 	6
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	18
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	7
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	1

Overlaps with: MNEST041638 MNEST054846
Overlaps with miRBase pre-miRNAs: vvi-MIR319f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Vitis vinifera	GSM458930-2718	TTGGACTGAAGGGAGCTCCC	GAGCTCTCTTTAGTCCAGTC	down	1	0

Secondary structure

AGTGATACAGTGGGAGGGTTTTGTGGAAGAAGGAGCTCTCTTTAGTCCAGTCCGAGACAGCTTCAAGGCTGATACGTGGCTGCTGACTCGTTGCTTCAAGAACTCATCACATAGGCCTGGAAAAGATGGATGGTTTTTTGATCCAACGATGCAGGAGCTGCGTTCAGTTATGGCTGTCACGTCTTGGACTGAAGGGAGCTCCCTTGTATTCCACAGCACTCAATGATCTTGT
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	95
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	218
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	11
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1376
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	1472
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	41
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTT 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	18
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	7
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	1

Overlaps with: MNEST041635 MNEST054843
Overlaps with miRBase pre-miRNAs: vvi-MIR319b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Vitis vinifera	GSM458929-2717	TTGGACTGAAGGGAGCTCCC	GAGCTCCTTTTAGTCCAATA	down	2	0

Secondary structure

GGAACAGCTGAAGAGCTCCTTTTAGTCCAATAAAGAGGGCTGAGGGGCGGCCAGAGCTGCCATCTCATGCACTTGGCTATGCTTATTCTTTTCTCAATCAATTCGGTTCGAGTATGGCTGTGGAGTGACAAATGCTAAGTTTAGCCTGATGCATGACATGGGAGCAACTCCTCCGCACGCTTTGCCCACTCATTGGACTGAAGGGAGCTCCCAGGGCAGAT
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCC 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCC 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	16
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	3898
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	142
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	13

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Vitis vinifera	GSM458929-2717	TTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCAGTCCACTC	down	2	0

Secondary structure

TGGGTGGGTTCCTTGATGGTTTACATTGAAGAGAGCTTTCTTCAGTCCACTCATGGGTGGCAGTAGGATTGAATTAGCTGCCGACTCATTCATCCAAATACTGTGTTAAGGACTACCCAGTAAATGATTGAATGATGCGGGAGACAAATTGGATCTTAAGCTCCCTGTGCTTGGACTGAAGGGAGCTCCCTTCACTGCAATCTTATCCAAATCTGTCTT
-----------------------------AGAGAGCTTTCTTCAGTCCAC 	1
-------------------------------AGAGCTTTCTTCAGTCCACTC 	1
-----------------------------------------------------TGGGTGGCAGTAGGATTGAATT 	1
--------------------------------------------------------------------------TAGCTGCCGACTCATTCATCC 	1
---------------------------------------------------------------------------AGCTGCCGACTCATTCATCC 	3
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAAATT 	1
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAAAT 	12
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAAA 	25
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAA 	173
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACA 	49
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGAC 	13
-------------------------------------------------------------------------------------------------------------------------------TTGAATGATGCGGGAGACAAAT 	12
-------------------------------------------------------------------------------------------------------------------------------TTGAATGATGCGGGAGACAAA 	2
-------------------------------------------------------------------------------------------------------------------------------TTGAATGATGCGGGAGACAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTGGACTGAAGGGAGCTC 	31
------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGGACTGAAGGGAGCTCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGGACTGAAGGGAGCTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCTT 	8
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	199
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	644
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	20
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	10
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	33
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	3230
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	3898
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	142
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	22
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	13
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	2

Overlaps with: MNEST041636 MNEST054844
Overlaps with miRBase pre-miRNAs: vvi-MIR319c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Vitis vinifera	GSM458929-2717	TTTGGACTGAAGGGAGCTCCT	GGGTTCCTTTGCAGCCCAAAAC	down	1	1

Secondary structure

CTGCAGAAATGGGGGTTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTCCTAGTTCTTCT
---------------------------------------------------------------------------TTTTGGACTGAAGGGAGCTCCT 	6
---------------------------------------------------------------------------TTTTGGACTGAAGGGAGCTCC 	2
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCTA 	1
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	3137
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCC 	66
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTC 	5
-----------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCT 	253
-----------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	142
------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCTAG 	19
------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCT 	4

Overlaps with: MNEST008295
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Vitis vinifera	GSM458929-2717	TTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCAGTCCACTC	down	2	0

Secondary structure

TGGGCCTGTGTATTATGAGAAGTGGTTTAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGTTAGGGGTTTGGATTAGCTGCCGACTCATTCATTCAAACACAGTAGAATGGAAATGGAGTTTACTACTGTGAATGTGTGAATGATGCGGGAGGTAAATTTCATCCTTTTCTTGTCTGTGCTTGGACTGAAGGGAGCTCCCTTCTACTGTTTTCTTCATGTTTACCCTTT
----------------------------------------------------------------------------AGCTGCCGACTCATTCATTC 	1
----------------------------------------------------------------------------------------------------------------------------------------TGTGAATGATGCGGGAGGTAA 	9
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTGGACTGAAGGGAGCTC 	31
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGGACTGAAGGGAGCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCTT 	8
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	199
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	644
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	20
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	10
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	33
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	3230
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	3898
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	142
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	22
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	13
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	2

Overlaps with: MNEST041638 MNEST054846
Overlaps with miRBase pre-miRNAs: vvi-MIR319f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Vitis vinifera	GSM458929-2717	TTGGACTGAAGGGAGCTCCC	GAGCTCTCTTTAGTCCAGTC	down	1	0

Secondary structure

AGTGATACAGTGGGAGGGTTTTGTGGAAGAAGGAGCTCTCTTTAGTCCAGTCCGAGACAGCTTCAAGGCTGATACGTGGCTGCTGACTCGTTGCTTCAAGAACTCATCACATAGGCCTGGAAAAGATGGATGGTTTTTTGATCCAACGATGCAGGAGCTGCGTTCAGTTATGGCTGTCACGTCTTGGACTGAAGGGAGCTCCCTTGTATTCCACAGCACTCAATGATCTTGT
--------------------------------------------------------------------------------------------------------------------------------------------ATCCAACGATGCAGGAGCTGCG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCTT 	8
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	199
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	644
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	20
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	10
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	33
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	3230
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	3898
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	142
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	22
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	13
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	2

Overlaps with: MNEST041635 MNEST054843
Overlaps with miRBase pre-miRNAs: vvi-MIR319b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Vitis vinifera	GSM458928-2716	TTGGACTGAAGGGAGCTCCC	GAGCTCCTTTTAGTCCAATA	down	2	0

Secondary structure

GGAACAGCTGAAGAGCTCCTTTTAGTCCAATAAAGAGGGCTGAGGGGCGGCCAGAGCTGCCATCTCATGCACTTGGCTATGCTTATTCTTTTCTCAATCAATTCGGTTCGAGTATGGCTGTGGAGTGACAAATGCTAAGTTTAGCCTGATGCATGACATGGGAGCAACTCCTCCGCACGCTTTGCCCACTCATTGGACTGAAGGGAGCTCCCAGGGCAGAT
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	15
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	2938
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	110
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	15

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Vitis vinifera	GSM458928-2716	TTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCAGTCCACTC	down	2	0

Secondary structure

TGGGTGGGTTCCTTGATGGTTTACATTGAAGAGAGCTTTCTTCAGTCCACTCATGGGTGGCAGTAGGATTGAATTAGCTGCCGACTCATTCATCCAAATACTGTGTTAAGGACTACCCAGTAAATGATTGAATGATGCGGGAGACAAATTGGATCTTAAGCTCCCTGTGCTTGGACTGAAGGGAGCTCCCTTCACTGCAATCTTATCCAAATCTGTCTT
-----------------------------AGAGAGCTTTCTTCAGTCCAC 	1
---------------------------------------------------------------------------AGCTGCCGACTCATTCATCCA 	1
---------------------------------------------------------------------------AGCTGCCGACTCATTCATCC 	5
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAAAT 	21
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAAA 	18
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACAA 	86
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGACA 	29
------------------------------------------------------------------------------------------------------------------------------ATTGAATGATGCGGGAGAC 	15
-------------------------------------------------------------------------------------------------------------------------------TTGAATGATGCGGGAGACAAAT 	1
-------------------------------------------------------------------------------------------------------------------------------TTGAATGATGCGGGAGACAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTGGACTGAAGGGAGCTC 	8
------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGGACTGAAGGGAGCTCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGGACTGAAGGGAGCTC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCTT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	225
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	491
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	19
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	43
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	21
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1227
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	2938
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	110
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	12
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	15
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	1

Overlaps with: MNEST041636 MNEST054844
Overlaps with miRBase pre-miRNAs: vvi-MIR319c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Vitis vinifera	GSM458928-2716	TTGGACTGAAGGGAGCTCC	GGTTCCTTTGCAGCCCAAAA	down	1	1

Secondary structure

TCAAGAAAACTGCAGAAATGGGGGTTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTCCTAGTTCTTCTCTTTTCCTT
-------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	56
-------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCC 	3
-------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTC 	12
--------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCT 	85
--------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	110
---------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCTAG 	1

Overlaps with: MNEST041637 MNEST054845
Overlaps with miRBase pre-miRNAs: vvi-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Vitis vinifera	GSM458928-2716	TTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCAGTCCACTC	down	2	0

Secondary structure

TGGGCCTGTGTATTATGAGAAGTGGTTTAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGTTAGGGGTTTGGATTAGCTGCCGACTCATTCATTCAAACACAGTAGAATGGAAATGGAGTTTACTACTGTGAATGTGTGAATGATGCGGGAGGTAAATTTCATCCTTTTCTTGTCTGTGCTTGGACTGAAGGGAGCTCCCTTCTACTGTTTTCTTCATGTTTACCCTTT
----------------------------------------------------------------------------AGCTGCCGACTCATTCATTCA 	4
----------------------------------------------------------------------------AGCTGCCGACTCATTCATTC 	1
----------------------------------------------------------------------------------------------------------------------------------------TGTGAATGATGCGGGAGGTAAA 	2
----------------------------------------------------------------------------------------------------------------------------------------TGTGAATGATGCGGGAGGTAA 	122
----------------------------------------------------------------------------------------------------------------------------------------TGTGAATGATGCGGGAGGTA 	2
-----------------------------------------------------------------------------------------------------------------------------------------GTGAATGATGCGGGAGGTAAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTGCTTGGACTGAAGGGA 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTGGACTGAAGGGAGCTC 	8
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGGACTGAAGGGAGCTC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCTT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	225
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	491
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	19
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	43
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	21
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1227
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	2938
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	110
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	12
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	15
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	1

Overlaps with: MNEST041638 MNEST054846
Overlaps with miRBase pre-miRNAs: vvi-MIR319f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Vitis vinifera	GSM458928-2716	TTGGACTGAAGGGAGCTCCC	GAGCTCTCTTTAGTCCAGTC	down	1	0

Secondary structure

AGTGATACAGTGGGAGGGTTTTGTGGAAGAAGGAGCTCTCTTTAGTCCAGTCCGAGACAGCTTCAAGGCTGATACGTGGCTGCTGACTCGTTGCTTCAAGAACTCATCACATAGGCCTGGAAAAGATGGATGGTTTTTTGATCCAACGATGCAGGAGCTGCGTTCAGTTATGGCTGTCACGTCTTGGACTGAAGGGAGCTCCCTTGTATTCCACAGCACTCAATGATCTTGT
--------------------------------------------------------------------------------------------------------------------------------------------ATCCAACGATGCAGGAGCTGCG 	21
--------------------------------------------------------------------------------------------------------------------------------------------ATCCAACGATGCAGGAGCTGC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------ACGATGCAGGAGCTGCGTTCAGT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCTT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	225
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	491
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	19
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	43
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTT 	21
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1227
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	2938
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	110
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	12
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	15
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	1

Overlaps with: MNEST041635 MNEST054843
Overlaps with miRBase pre-miRNAs: vvi-MIR319b
HuntMi prediction: true miRNA