miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTGGACTGAAGGGAGCTCCC

selected species: Glycine max

12 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Glycine max	GSM852280	TTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCAGTCCACTC	down	2	0

Secondary structure

TAATATGAGGAATAGTTTAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGTAGAGGGTTTGAATTAGCTGCTGACTCATTCATTCAAACACAATAGAATTAGTATCATGGTATGCTATTGTGAATGTGTGAATGATGCAGGAGGTAAAGTTCATCCTTTTCTTGTCTTTGCTTGGACTGAAGGGAGCTCCCTTTTACTGTTTTTATCATT
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	10
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	8
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

Overlaps with miRBase pre-miRNAs: gma-MIR319k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Glycine max	GSM852280	TTGGACTGAAGGGAGCTCCC	GAGCTCTCTTCAGCCCACTC	down	3	0

Secondary structure

GATCAGGTAAGAGAGCTCTCTTCAGCCCACTCATAGGTGATAATAGGATTTAATTAGCTGCCGACTCATTCATACACATGCTGAGTGAATTAATGAATAATACTCAGTAAATGAGTGAATGATACGGGAGACAAATTGAATCTTATGTTTTCTGTACTTGGACTGAAGGGAGCTCCCTTTTCTCGC
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	10
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	8
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

Overlaps with miRBase pre-miRNAs: gma-MIR319j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Glycine max	GSM852280	TTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCAGTCCACTC	down	2	0

Secondary structure

CGTTGAAGACCCTAAGGTAAGAGAGCTTTCTTCAGTCCACTCATGGGTGACAGTAAGATTCAATTAGCTGCCGACTCATTCATCCAAATGTTGAGTGTAAGCGAATAAATATACTCAGCAGATGAGTGAATGATGCGGGAGACAAATTGAATCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTCCCTTTTCCTTTTGTCTCTTAC
----------------------------------------------------------------------------------------------------------------------------AGTGAATGATGCGGGAGACAAAT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	10
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	8
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

Overlaps with: MNEST003493
Overlaps with miRBase pre-miRNAs: gma-MIR319a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Glycine max	GSM852280	TTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCAGTCCACTT	down	2	0

Secondary structure

TAAGTCCTAAGCGACGGTAAGAGAGCTTTCTTCAGTCCACTTATGGGTGACAATAAGATTTCAATTAGCTGCCGACTCATTCATCCAAATGCTGAGTGAAAGCGAAGAAAGATACTCAGCAAATGAGTGAATGATGCGGGAGACAAATTGATTCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTCCCTTTTTCTTTTGAATCTTCT
-----------------------------------------------------------------------------------------------------------------------------AGTGAATGATGCGGGAGACAAAT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	10
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	8
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

Overlaps with: MNEST040465 MNEST048573
Overlaps with miRBase pre-miRNAs: gma-MIR319b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Glycine max	GSM852280	TTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCAGTCCACTC	down	2	0

Secondary structure

TACTATTAGGAATAGTTGAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGAAAGGGGTTTGAATTAGCTGCTGACTCATTCATTCAAACACAATAGATTCGGCTTCATGATATGTTATTGTGAATGTGTGAATGATGCGGGAGGTAAATTTCTTCCTTTTCTTGTCCTTGCTTGGACTGAAGGGAGCTCCCTCTAACTTCTTATAATGTT
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	10
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	8
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

Overlaps with miRBase pre-miRNAs: gma-MIR319h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Glycine max	GSM543395	TTGGACTGAAGGGAGCTCCC	GAGCTCTCTTCAGCCCACTC	down	3	0

Secondary structure

GATCAGGTAAGAGAGCTCTCTTCAGCCCACTCATAGGTGATAATAGGATTTAATTAGCTGCCGACTCATTCATACACATGCTGAGTGAATTAATGAATAATACTCAGTAAATGAGTGAATGATACGGGAGACAAATTGAATCTTATGTTTTCTGTACTTGGACTGAAGGGAGCTCCCTTTTCTCGC
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	5

Overlaps with miRBase pre-miRNAs: gma-MIR319j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Glycine max	GSM543395	TTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCAGTCCACTC	down	2	0

Secondary structure

TAATATGAGGAATAGTTTAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGTAGAGGGTTTGAATTAGCTGCTGACTCATTCATTCAAACACAATAGAATTAGTATCATGGTATGCTATTGTGAATGTGTGAATGATGCAGGAGGTAAAGTTCATCCTTTTCTTGTCTTTGCTTGGACTGAAGGGAGCTCCCTTTTACTGTTTTTATCATT
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	5

Overlaps with miRBase pre-miRNAs: gma-MIR319k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Glycine max	GSM543395	TTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCAGTCCACTC	down	2	0

Secondary structure

CGTTGAAGACCCTAAGGTAAGAGAGCTTTCTTCAGTCCACTCATGGGTGACAGTAAGATTCAATTAGCTGCCGACTCATTCATCCAAATGTTGAGTGTAAGCGAATAAATATACTCAGCAGATGAGTGAATGATGCGGGAGACAAATTGAATCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTCCCTTTTCCTTTTGTCTCTTAC
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	5

Overlaps with: MNEST003493
Overlaps with miRBase pre-miRNAs: gma-MIR319a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Glycine max	GSM543395	TTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCAGTCCACTT	down	2	0

Secondary structure

TAAGTCCTAAGCGACGGTAAGAGAGCTTTCTTCAGTCCACTTATGGGTGACAATAAGATTTCAATTAGCTGCCGACTCATTCATCCAAATGCTGAGTGAAAGCGAAGAAAGATACTCAGCAAATGAGTGAATGATGCGGGAGACAAATTGATTCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTCCCTTTTTCTTTTGAATCTTCT
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	5

Overlaps with: MNEST040465 MNEST048573
Overlaps with miRBase pre-miRNAs: gma-MIR319b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Glycine max	GSM543395	TTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCAGTCCACTC	down	2	0

Secondary structure

CAAGATGTATGTATTATTAAGAATAGTTGAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGTAAGGGGTTAGAATTAGCTGCTGACTCATTCATTCAAACACAATAGATCTGGCATCATGATATGCTATTGTGAATGTGTGAATGATGCGGGAGGTAAATTTCTTCCTTTTCCTGTCTGTGCTTGGACTGAAGGGAGCTCCCTCTAACTGTCTATAATGTTATCTTTTCCTT
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	5

Overlaps with miRBase pre-miRNAs: gma-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Glycine max	GSM543395	TTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCAGTCCACTC	down	2	0

Secondary structure

TACTATTAGGAATAGTTGAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGAAAGGGGTTTGAATTAGCTGCTGACTCATTCATTCAAACACAATAGATTCGGCTTCATGATATGTTATTGTGAATGTGTGAATGATGCGGGAGGTAAATTTCTTCCTTTTCTTGTCCTTGCTTGGACTGAAGGGAGCTCCCTCTAACTTCTTATAATGTT
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	5

Overlaps with miRBase pre-miRNAs: gma-MIR319h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Glycine max	GSM543395	TTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCAGTCCACTC	down	2	0

Secondary structure

ATTTCCCTTTCAATATGAGGAATAGTTTAAGAGAGCTTCCTTCAGTCCACTCATGGATGGATAGAGGGTTTGAATTAGCTGCTGACTCATTCATTCAAACACAATAGAACGGGTGTCATGGTATGCTATTGTGAATGCCTGAATGATGCAGGAGGTAAAGTTCATCCTTTTCTTGTCTGTGCTTGGACTGAAGGGAGCTCCCTTTTACTGTTTTTATCATTATTTTTATAT
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	5

Overlaps with miRBase pre-miRNAs: gma-MIR319m
HuntMi prediction: true miRNA