miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTGGACTGAAGGGAGCTCCCT

selected species: Arabidopsis thaliana



17 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TTGGACTGAAGGGAGCTCCCT AGCTTCCTTGAGTCCATTC down 4 0


Secondary structure

AATTGATGTTTTAGGAATATATATGTAGAGAGAGCTTCCTTGAGTCCATTCACAGGTCGTGATATGATTCAATTAGCTTCCGACTCATTCATCCAAATACCGAGTCGCCAAAATTCAAACTAGACTCGTTAAATGAATGAATGATGCGGTAGACAAATTGGATCATTGATTCTCTTTGATTGGACTGAAGGGAGCTCCCTCTCTCTTTTGTATTCCAATTTTCTTGATT
------------------------------AGAGCTTCCTTGAGTCCATTC 	4
--------------------------------AGCTTCCTTGAGTCCATTCAC 	5
--------------------------------AGCTTCCTTGAGTCCATTCA 	2
-------------------------------------------------------------------------TAGCTTCCGACTCATTCATCCA 	2
-------------------------------------------------------------------------TAGCTTCCGACTCATTCATCC 	4
--------------------------------------------------------------------------AGCTTCCGACTCATTCATCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCC 	14
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTC 	13
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTC 	68
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1592
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	51
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	7
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	1


Overlaps with: MNEST047656
Overlaps with miRBase pre-miRNAs: ath-MIR319a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM304282 TTGGACTGAAGGGAGCTCCCT AGAGCTTTCTTCGGTCCACTC down 2 0


Secondary structure

TGGTGGAGGAAGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATGGTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTATTTTTATC
------------AGAGCTTTCTTCGGTCCACT 	2
-------------GAGCTTTCTTCGGTCCACTC 	3
-------------GAGCTTTCTTCGGTCCACT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	15
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTA 	25
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1592
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	51
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	7
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	1


Overlaps with: MNEST040070 MNEST046993
Overlaps with miRBase pre-miRNAs: ath-MIR319b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM366870 TTGGACTGAAGGGAGCTCCCT AGCTTCCTTGAGTCCATTC down 4 0


Secondary structure

AATTGATGTTTTAGGAATATATATGTAGAGAGAGCTTCCTTGAGTCCATTCACAGGTCGTGATATGATTCAATTAGCTTCCGACTCATTCATCCAAATACCGAGTCGCCAAAATTCAAACTAGACTCGTTAAATGAATGAATGATGCGGTAGACAAATTGGATCATTGATTCTCTTTGATTGGACTGAAGGGAGCTCCCTCTCTCTTTTGTATTCCAATTTTCTTGATT
------------------------------AGAGCTTCCTTGAGTCCATTC 	4
--------------------------------AGCTTCCTTGAGTCCATTCAC 	2
--------------------------------------------TCCATTCACAGGTCGTGATATGATT 	1
---------------------------------------------------ACAGGTCGTGATATGATTCAAT 	2
-----------------------------------------------------AGGTCGTGATATGATTCAATT 	1
-------------------------------------------------------------------------TAGCTTCCGACTCATTCATCC 	5
-------------------------------------------------------------------------TAGCTTCCGACTCATTCATCCA 	6
---------------------------------------------------------------------------------------------------------------------------------------AATGAATGATGCGGTAGACA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCCCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTC 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCC 	24
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCCT 	8
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCC 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCC 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTC 	47
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1358
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	173
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	23
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	12
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	1


Overlaps with: MNEST047656
Overlaps with miRBase pre-miRNAs: ath-MIR319a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM366870 TTGGACTGAAGGGAGCTCCCT AGAGCTTTCTTCGGTCCACTC down 2 0


Secondary structure

TGGTGGAGGAAGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATGGTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTATTTTTATC
------------AGAGCTTTCTTCGGTCCACTC 	8
------------AGAGCTTTCTTCGGTCCAC 	1
------------AGAGCTTTCTTCGGTCCACT 	3
-------------GAGCTTTCTTCGGTCCACTC 	14
-------------GAGCTTTCTTCGGTCCACTCA 	2
-------------GAGCTTTCTTCGGTCCACT 	6
----------------------------------------------------------GACTCTCGACTCATTCATCCA 	2
----------------------------------------------------------GACTCTCGACTCATTCATCC 	2
---------------------------------------------------------------------------------------------------------------------AATGAATGATGCGAGAGACAAATT 	1
---------------------------------------------------------------------------------------------------------------------AATGAATGATGCGAGAGACA 	1
---------------------------------------------------------------------------------------------------------------------AATGAATGATGCGAGAGACAA 	1
---------------------------------------------------------------------------------------------------------------------AATGAATGATGCGAGAGAC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCTA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	62
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1358
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTA 	23
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	173
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	23
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	12
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	1


Overlaps with: MNEST040070 MNEST046993
Overlaps with miRBase pre-miRNAs: ath-MIR319b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM366869 TTGGACTGAAGGGAGCTCCCT AGCTTCCTTGAGTCCATTC down 4 0


Secondary structure

AATTGATGTTTTAGGAATATATATGTAGAGAGAGCTTCCTTGAGTCCATTCACAGGTCGTGATATGATTCAATTAGCTTCCGACTCATTCATCCAAATACCGAGTCGCCAAAATTCAAACTAGACTCGTTAAATGAATGAATGATGCGGTAGACAAATTGGATCATTGATTCTCTTTGATTGGACTGAAGGGAGCTCCCTCTCTCTTTTGTATTCCAATTTTCTTGATT
------------------------------AGAGCTTCCTTGAGTCCATTC 	2
--------------------------------AGCTTCCTTGAGTCCATTCA 	1
--------------------------------AGCTTCCTTGAGTCCATTCAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCCCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTC 	9
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	49
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	199
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	2


Overlaps with: MNEST047656
Overlaps with miRBase pre-miRNAs: ath-MIR319a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM366869 TTGGACTGAAGGGAGCTCCCT AGAGCTTTCTTCGGTCCACTC down 2 0


Secondary structure

TGGTGGAGGAAGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATGGTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTATTTTTATC
------------AGAGCTTTCTTCGGTCCACTC 	1
------------AGAGCTTTCTTCGGTCCACT 	1
-------------GAGCTTTCTTCGGTCCACTC 	4
-------------GAGCTTTCTTCGGTCCACT 	6
----------------------------------TGGAGTAATATGTGAGATTTAATT 	1
-------------------------------------------------------ATTGACTCTCGACTCATTCATCCA 	3
---------------------------------------------------------------------------------------------------------------------AATGAATGATGCGAGAGACAA 	4
---------------------------------------------------------------------------------------------------------------------AATGAATGATGCGAGAGACA 	1
----------------------------------------------------------------------------------------------------------------------ATGAATGATGCGAGAGACAAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	17
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	49
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTA 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	199
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	2


Overlaps with: MNEST040070 MNEST046993
Overlaps with miRBase pre-miRNAs: ath-MIR319b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM304284 TTGGACTGAAGGGAGCTCCCT AGCTTCCTTGAGTCCATTC down 4 0


Secondary structure

AATTGATGTTTTAGGAATATATATGTAGAGAGAGCTTCCTTGAGTCCATTCACAGGTCGTGATATGATTCAATTAGCTTCCGACTCATTCATCCAAATACCGAGTCGCCAAAATTCAAACTAGACTCGTTAAATGAATGAATGATGCGGTAGACAAATTGGATCATTGATTCTCTTTGATTGGACTGAAGGGAGCTCCCTCTCTCTTTTGTATTCCAATTTTCTTGATT
------------------------------AGAGCTTCCTTGAGTCCATTC 	7
-------------------------------GAGCTTCCTTGAGTCCATTC 	1
--------------------------------AGCTTCCTTGAGTCCATTCAC 	11
--------------------------------AGCTTCCTTGAGTCCATTCA 	14
---------------------------------------------------ACAGGTCGTGATATGATTCAAT 	3
-----------------------------------------------------------------------ATTAGCTTCCGACTCATTCATCCA 	1
-------------------------------------------------------------------------TAGCTTCCGACTCATTCATCCA 	1
-------------------------------------------------------------------------TAGCTTCCGACTCATTCATCC 	3
---------------------------------------------------------------------------------------------------------------------------------------AATGAATGATGCGGTAGACAAA 	1
---------------------------------------------------------------------------------------------------------------------------------------AATGAATGATGCGGTAGACA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCC 	10
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTC 	17
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	258
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	28
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	1


Overlaps with: MNEST047656
Overlaps with miRBase pre-miRNAs: ath-MIR319a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM304284 TTGGACTGAAGGGAGCTCCCT AGAGCTTTCTTCGGTCCACTC down 2 0


Secondary structure

TGGTGGAGGAAGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATGGTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTATTTTTATC
------------AGAGCTTTCTTCGGTCCACTC 	1
------------AGAGCTTTCTTCGGTCCACT 	9
------------AGAGCTTTCTTCGGTCCAC 	1
-------------GAGCTTTCTTCGGTCCACTC 	1
-------------GAGCTTTCTTCGGTCCACT 	12
----------------------------------------------------------GACTCTCGACTCATTCATCC 	1
---------------------------------------------------------------------------------------------------------------------AATGAATGATGCGAGAGACA 	1
---------------------------------------------------------------------------------------------------------------------AATGAATGATGCGAGAGAC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTA 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	258
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	28
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	1


Overlaps with: MNEST040070 MNEST046993
Overlaps with miRBase pre-miRNAs: ath-MIR319b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM366866 TTGGACTGAAGGGAGCTCCCT AGCTTCCTTGAGTCCATTC down 4 0


Secondary structure

AATTGATGTTTTAGGAATATATATGTAGAGAGAGCTTCCTTGAGTCCATTCACAGGTCGTGATATGATTCAATTAGCTTCCGACTCATTCATCCAAATACCGAGTCGCCAAAATTCAAACTAGACTCGTTAAATGAATGAATGATGCGGTAGACAAATTGGATCATTGATTCTCTTTGATTGGACTGAAGGGAGCTCCCTCTCTCTTTTGTATTCCAATTTTCTTGATT
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTC 	15
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	49
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1331
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	3


Overlaps with: MNEST047656
Overlaps with miRBase pre-miRNAs: ath-MIR319a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Arabidopsis thaliana GSM366866 TTGGACTGAAGGGAGCTCCCT AGAGCTTTCTTCGGTCCACTC down 2 0


Secondary structure

TGGTGGAGGAAGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATGGTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTATTTTTATC
-------------GAGCTTTCTTCGGTCCACT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	31
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTA 	9
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	49
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	1331
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	3


Overlaps with: MNEST040070 MNEST046993
Overlaps with miRBase pre-miRNAs: ath-MIR319b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Arabidopsis thaliana GSM304283 TTGGACTGAAGGGAGCTCCCT AGCTTCCTTGAGTCCATTC down 4 0


Secondary structure

AATTGATGTTTTAGGAATATATATGTAGAGAGAGCTTCCTTGAGTCCATTCACAGGTCGTGATATGATTCAATTAGCTTCCGACTCATTCATCCAAATACCGAGTCGCCAAAATTCAAACTAGACTCGTTAAATGAATGAATGATGCGGTAGACAAATTGGATCATTGATTCTCTTTGATTGGACTGAAGGGAGCTCCCTCTCTCTTTTGTATTCCAATTTTCTTGATT
----------------------------AGAGAGCTTCCTTGAGTCCA 	1
------------------------------AGAGCTTCCTTGAGTCCATTC 	23
--------------------------------AGCTTCCTTGAGTCCATTCAC 	215
--------------------------------AGCTTCCTTGAGTCCATTCA 	2
--------------------------------AGCTTCCTTGAGTCCATTC 	4
--------------------------------------------------------------------------AGCTTCCGACTCATTCATCCA 	6
--------------------------------------------------------------------------------------------------------------------------------------------ATGATGCGGTAGACAAATTGGA 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCC 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCCT 	767
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCC 	997
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCC 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTC 	38
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	4861
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	27
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	7
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	9
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	2


Overlaps with: MNEST047656
Overlaps with miRBase pre-miRNAs: ath-MIR319a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Arabidopsis thaliana GSM304283 TTGGACTGAAGGGAGCTCCCT AGAGCTTTCTTCGGTCCACTC down 2 0


Secondary structure

TGGTGGAGGAAGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATGGTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTATTTTTATC
------------AGAGCTTTCTTCGGTCCACTC 	10
------------AGAGCTTTCTTCGGTCCACT 	1
-------------GAGCTTTCTTCGGTCCACT 	2
---------------------------------------------------------------------------------------------------------------------AATGAATGATGCGAGAGACAA 	1
----------------------------------------------------------------------------------------------------------------------ATGAATGATGCGAGAGACAAA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTA 	28
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	4861
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	27
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	7
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	9
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	2


Overlaps with: MNEST040070 MNEST046993
Overlaps with miRBase pre-miRNAs: ath-MIR319b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Arabidopsis thaliana GSM304285 TTGGACTGAAGGGAGCTCCCT AGCTTCCTTGAGTCCATTC down 4 0


Secondary structure

AATTGATGTTTTAGGAATATATATGTAGAGAGAGCTTCCTTGAGTCCATTCACAGGTCGTGATATGATTCAATTAGCTTCCGACTCATTCATCCAAATACCGAGTCGCCAAAATTCAAACTAGACTCGTTAAATGAATGAATGATGCGGTAGACAAATTGGATCATTGATTCTCTTTGATTGGACTGAAGGGAGCTCCCTCTCTCTTTTGTATTCCAATTTTCTTGATT
-------------------------------GAGCTTCCTTGAGTCCATT 	1
--------------------------------AGCTTCCTTGAGTCCATTCAC 	5
--------------------------------AGCTTCCTTGAGTCCATTCA 	4
-------------------------------------------------------------------------TAGCTTCCGACTCATTCATCCA 	1
-------------------------------------------------------------------------TAGCTTCCGACTCATTCATCC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCCT 	8
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCC 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTC 	15
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	477
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	30
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	6
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	1


Overlaps with: MNEST047656
Overlaps with miRBase pre-miRNAs: ath-MIR319a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Arabidopsis thaliana GSM304285 TTGGACTGAAGGGAGCTCCCT AGAGCTTTCTTCGGTCCACTC down 2 0


Secondary structure

TGGTGGAGGAAGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATGGTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTATTTTTATC
------------AGAGCTTTCTTCGGTCCACTC 	3
-------------GAGCTTTCTTCGGTCCACT 	2
---------------------------------------------------------TGACTCTCGACTCATTCATCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	7
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTA 	10
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	477
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	30
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	6
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	1


Overlaps with: MNEST040070 MNEST046993
Overlaps with miRBase pre-miRNAs: ath-MIR319b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Arabidopsis thaliana GSM518432-13544 TTGGACTGAAGGGAGCTCCCT AGCTTCCTTGAGTCCATTC down 4 0


Secondary structure

AATTGATGTTTTAGGAATATATATGTAGAGAGAGCTTCCTTGAGTCCATTCACAGGTCGTGATATGATTCAATTAGCTTCCGACTCATTCATCCAAATACCGAGTCGCCAAAATTCAAACTAGACTCGTTAAATGAATGAATGATGCGGTAGACAAATTGGATCATTGATTCTCTTTGATTGGACTGAAGGGAGCTCCCTCTCTCTTTTGTATTCCAATTTTCTTGATT
------------------------------AGAGCTTCCTTGAGTCCATTC 	3
--------------------------------AGCTTCCTTGAGTCCATTCA 	1
--------------------------------AGCTTCCTTGAGTCCATTCAC 	8
---------------------------------------------------ACAGGTCGTGATATGATTCAAT 	8
-----------------------------------------------------AGGTCGTGATATGATTCAATT 	1
-------------------------------------------------------------------------TAGCTTCCGACTCATTCATCCA 	1
-------------------------------------------------------------------------TAGCTTCCGACTCATTCATCC 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATCATTGATTCTCTTTGA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCC 	403
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCCC 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTCCCTC 	9
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCTC 	7
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGACTGAAGGGAGCT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCCT 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCC 	11
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGACTGAAGGGAGCTCCC 	45
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	1627
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	3766
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTC 	294
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	19
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	80
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	38
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	1


Overlaps with: MNEST047656
Overlaps with miRBase pre-miRNAs: ath-MIR319a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Arabidopsis thaliana GSM518432-13544 TTGGACTGAAGGGAGCTCCCT AGAGCTTTCTTCGGTCCACTC down 2 0


Secondary structure

TGGTGGAGGAAGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATGGTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTATTTTTATC
------------AGAGCTTTCTTCGGTCCACTC 	6
------------AGAGCTTTCTTCGGTCCACT 	3
------------AGAGCTTTCTTCGGTCCAC 	1
-------------GAGCTTTCTTCGGTCCACT 	30
-------------GAGCTTTCTTCGGTCCACTC 	32
-------------GAGCTTTCTTCGGTCCACTCA 	3
---------------------------------------------------------TGACTCTCGACTCATTCATCCA 	4
----------------------------------------------------------GACTCTCGACTCATTCATCCA 	2
----------------------------------------------------------GACTCTCGACTCATTCATCC 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------TCTATGCTTGGACTGAAGGGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCTA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	424
----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCT 	10
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	1627
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	3766
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTA 	151
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	19
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCTAT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCTA 	6
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	80
------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCT 	38
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCT 	1


Overlaps with: MNEST040070 MNEST046993
Overlaps with miRBase pre-miRNAs: ath-MIR319b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Arabidopsis thaliana GSM277608 TTGGACTGAAGGGAGCTCCCT AGAGCTTTCTTCGGTCCACTC down 2 0


Secondary structure

TGGTGGAGGAAGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATGGTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTATTTTTATC
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCT 	48
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	1


Overlaps with: MNEST040070 MNEST046993
Overlaps with miRBase pre-miRNAs: ath-MIR319b
HuntMi prediction: true miRNA