miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTGGACTGAAGGGAGCTCCTT

selected species: Arabidopsis thaliana



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TTGGACTGAAGGGAGCTCCTT GGAGATTCTTTCAGTCCAGTC down 1 0


Secondary structure

ACCAAAATAGATAGATATAGAAGGAGATTCTTTCAGTCCAGTCATGGATAGAAAAAGAAGAGGGTAGAAATATCTGCCGACTCATCCATCCAAACACTCGTGGTAGAGAAACGATAAATTTAAACCGCAGTGACTGTGTGAATGATGCGGGAGATATTTTTGATCCTTCTTTATCTGTGTTTGGACTGAAGGGAGCTCCTTCTTTTTCTACAAATTTTCA
--------------------AAGGAGATTCTTTCAGTCCAG 	1
-----------------------GAGATTCTTTCAGTCCAGTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCTT 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	12
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTTC 	10
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTT 	89
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	7

Overlaps with: MNEST040071 MNEST046994
Overlaps with miRBase pre-miRNAs: ath-MIR319c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM366870 TTGGACTGAAGGGAGCTCCTT GGAGATTCTTTCAGTCCAGTC down 1 0


Secondary structure

ACCAAAATAGATAGATATAGAAGGAGATTCTTTCAGTCCAGTCATGGATAGAAAAAGAAGAGGGTAGAAATATCTGCCGACTCATCCATCCAAACACTCGTGGTAGAGAAACGATAAATTTAAACCGCAGTGACTGTGTGAATGATGCGGGAGATATTTTTGATCCTTCTTTATCTGTGTTTGGACTGAAGGGAGCTCCTTCTTTTTCTACAAATTTTCA
-----------------------------------------------------------------------ATCTGCCGACTCATCCATCCA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCTT 	9
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	17
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTT 	108
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCT 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTTC 	7

Overlaps with: MNEST040071 MNEST046994
Overlaps with miRBase pre-miRNAs: ath-MIR319c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM366869 TTGGACTGAAGGGAGCTCCTT GGAGATTCTTTCAGTCCAGTC down 1 0


Secondary structure

ACCAAAATAGATAGATATAGAAGGAGATTCTTTCAGTCCAGTCATGGATAGAAAAAGAAGAGGGTAGAAATATCTGCCGACTCATCCATCCAAACACTCGTGGTAGAGAAACGATAAATTTAAACCGCAGTGACTGTGTGAATGATGCGGGAGATATTTTTGATCCTTCTTTATCTGTGTTTGGACTGAAGGGAGCTCCTTCTTTTTCTACAAATTTTCA
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTT 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1

Overlaps with: MNEST040071 MNEST046994
Overlaps with miRBase pre-miRNAs: ath-MIR319c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM304284 TTGGACTGAAGGGAGCTCCTT GGAGATTCTTTCAGTCCAGTC down 1 0


Secondary structure

ACCAAAATAGATAGATATAGAAGGAGATTCTTTCAGTCCAGTCATGGATAGAAAAAGAAGAGGGTAGAAATATCTGCCGACTCATCCATCCAAACACTCGTGGTAGAGAAACGATAAATTTAAACCGCAGTGACTGTGTGAATGATGCGGGAGATATTTTTGATCCTTCTTTATCTGTGTTTGGACTGAAGGGAGCTCCTTCTTTTTCTACAAATTTTCA
--------------------AAGGAGATTCTTTCAGTCCA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCTT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTTC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTT 	17
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	5

Overlaps with: MNEST040071 MNEST046994
Overlaps with miRBase pre-miRNAs: ath-MIR319c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM366866 TTGGACTGAAGGGAGCTCCTT GGAGATTCTTTCAGTCCAGTC down 1 0


Secondary structure

ACCAAAATAGATAGATATAGAAGGAGATTCTTTCAGTCCAGTCATGGATAGAAAAAGAAGAGGGTAGAAATATCTGCCGACTCATCCATCCAAACACTCGTGGTAGAGAAACGATAAATTTAAACCGCAGTGACTGTGTGAATGATGCGGGAGATATTTTTGATCCTTCTTTATCTGTGTTTGGACTGAAGGGAGCTCCTTCTTTTTCTACAAATTTTCA
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCTT 	8
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	24
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTTC 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTT 	145
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCTT 	1

Overlaps with: MNEST040071 MNEST046994
Overlaps with miRBase pre-miRNAs: ath-MIR319c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM304283 TTGGACTGAAGGGAGCTCCTT GGAGATTCTTTCAGTCCAGTC down 1 0


Secondary structure

ACCAAAATAGATAGATATAGAAGGAGATTCTTTCAGTCCAGTCATGGATAGAAAAAGAAGAGGGTAGAAATATCTGCCGACTCATCCATCCAAACACTCGTGGTAGAGAAACGATAAATTTAAACCGCAGTGACTGTGTGAATGATGCGGGAGATATTTTTGATCCTTCTTTATCTGTGTTTGGACTGAAGGGAGCTCCTTCTTTTTCTACAAATTTTCA
--------------------AAGGAGATTCTTTCAGTCCAG 	1
---------------------AGGAGATTCTTTCAGTCCAGTC 	2
-------------------------------------------------------------------AAATATCTGCCGACTCATCCA 	23
-------------------------------------------------------------------AAATATCTGCCGACTCATCC 	1
-----------------------------------------------------------------------ATCTGCCGACTCATCCATCCA 	26
-----------------------------------------------------------------------ATCTGCCGACTCATCCATCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCTT 	9
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	8
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTTC 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTT 	61
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	7

Overlaps with: MNEST040071 MNEST046994
Overlaps with miRBase pre-miRNAs: ath-MIR319c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM304285 TTGGACTGAAGGGAGCTCCTT GGAGATTCTTTCAGTCCAGTC down 1 0


Secondary structure

ACCAAAATAGATAGATATAGAAGGAGATTCTTTCAGTCCAGTCATGGATAGAAAAAGAAGAGGGTAGAAATATCTGCCGACTCATCCATCCAAACACTCGTGGTAGAGAAACGATAAATTTAAACCGCAGTGACTGTGTGAATGATGCGGGAGATATTTTTGATCCTTCTTTATCTGTGTTTGGACTGAAGGGAGCTCCTTCTTTTTCTACAAATTTTCA
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCTT 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	6
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTT 	31
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	6

Overlaps with: MNEST040071 MNEST046994
Overlaps with miRBase pre-miRNAs: ath-MIR319c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM518432-13544 TTGGACTGAAGGGAGCTCCTT GGAGATTCTTTCAGTCCAGTC down 1 0


Secondary structure

ACCAAAATAGATAGATATAGAAGGAGATTCTTTCAGTCCAGTCATGGATAGAAAAAGAAGAGGGTAGAAATATCTGCCGACTCATCCATCCAAACACTCGTGGTAGAGAAACGATAAATTTAAACCGCAGTGACTGTGTGAATGATGCGGGAGATATTTTTGATCCTTCTTTATCTGTGTTTGGACTGAAGGGAGCTCCTTCTTTTTCTACAAATTTTCA
-----------------------GAGATTCTTTCAGTCCAGTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCTT 	40
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCTTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	87
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTTCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTT 	983
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCT 	20
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCTTC 	18
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	19
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCTT 	2

Overlaps with: MNEST040071 MNEST046994
Overlaps with miRBase pre-miRNAs: ath-MIR319c
HuntMi prediction: true miRNA