miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTGGACTGAAGGGTGCTCCCT

selected species: Brachypodium distachyon



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TTGGACTGAAGGGTGCTCCCT AGAGCTCTCTTCAGTCCACTC down 3 0


Secondary structure

TAGTGGCTCATGCATGTATAAGAGAGCTCTCTTCAGTCCACTCTCAGATGACTGTAGGGTTTTATTAGCTGCCGATTCATCCATTCACCTACCAAGAATCATGAGGGCGTATATGTCTTGGTAGCCGACTGGATGGCACGGGAGCTACAAAAAGCTTTTCGTTGTTTGTGGTTGGACTGAAGGGTGCTCCCTTGCTTACAATACTGCACAA
------------------------------------------------------------------AGCTGCCGATTCATCCATTCA 	4
------------------------------------------------------------------AGCTGCCGATTCATCCATTC 	2
------------------------------------------------------------------AGCTGCCGATTCATCCATT 	1
-------------------------------------------------------------------------------------------------------------------------------ACTGGATGGCACGGGAGCTA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGCTTTTCGTTGTTTGTGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGTTGGACTGAAGGGTGC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTGGACTGAAGGGTGCTCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGTGCTCCCTT 	1476
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGTGCTCCCT 	8107
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGTGCTCCC 	1770
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGTGCTCC 	286
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGTGCTCCCTT 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGTGCTCCCT 	31
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGTGCTCCC 	15
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGTGCTCCCT 	2


Overlaps with: MNEST041771
Overlaps with miRBase pre-miRNAs: bdi-MIR319b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506621-23192 TTGGACTGAAGGGTGCTCCCT AGAGCTCTCTTCAGTCCACTC down 3 0


Secondary structure

TAGTGGCTCATGCATGTATAAGAGAGCTCTCTTCAGTCCACTCTCAGATGACTGTAGGGTTTTATTAGCTGCCGATTCATCCATTCACCTACCAAGAATCATGAGGGCGTATATGTCTTGGTAGCCGACTGGATGGCACGGGAGCTACAAAAAGCTTTTCGTTGTTTGTGGTTGGACTGAAGGGTGCTCCCTTGCTTACAATACTGCACAA
---------------------------------------------------------------------------------------CCTACCAAGAATCATGAGGGCGTAT 	1
-------------------------------------------------------------------------------------------------------------------------------ACTGGATGGCACGGGAGCTAC 	123
-------------------------------------------------------------------------------------------------------------------------------ACTGGATGGCACGGGAGCTACA 	1
-------------------------------------------------------------------------------------------------------------------------------ACTGGATGGCACGGGAGCTACAAA 	1
-------------------------------------------------------------------------------------------------------------------------------ACTGGATGGCACGGGAGCT 	2
--------------------------------------------------------------------------------------------------------------------------------CTGGATGGCACGGGAGCTAC 	6
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGTGCTCC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGTGCTCCCTT 	8
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGTGCTCCC 	12
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGTGCTCCCT 	155
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGTGCTCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGTGCTCCCT 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGTGCTCCCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGAAGGGTGCTCCCTT 	1


Overlaps with: MNEST041771
Overlaps with miRBase pre-miRNAs: bdi-MIR319b
HuntMi prediction: true miRNA