miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTGGCATTCTGTCCACCTCC

selected species: Arabidopsis thaliana

22 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM304282	TTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATA	up	3	0

Secondary structure

TTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATA
--------------------------------------------------TTTGGCATTCTGTCCACCTCCT 	1
--------------------------------------------------TTTGGCATTCTGTCCACCTCC 	91
--------------------------------------------------TTTGGCATTCTGTCCACCTC 	3
---------------------------------------------------TTGGCATTCTGTCCACCTCCT 	2
---------------------------------------------------TTGGCATTCTGTCCACCTCC 	388
---------------------------------------------------TTGGCATTCTGTCCACCTC 	8
-------------------------------------------------------------------------------------------------------------------------------AGGTGGGCATACTGCCAATAGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGTTTCTTTG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGTTAGGGTTTCTTTGTA 	1

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM304282	TTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATA	up	3	0

Secondary structure

GGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATG
------------------------------------------------------------TTTGGCATTCTGTCCACCTCCT 	1
------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	91
------------------------------------------------------------TTTGGCATTCTGTCCACCTC 	3
-------------------------------------------------------------TTGGCATTCTGTCCACCTCCTTC 	1
-------------------------------------------------------------TTGGCATTCTGTCCACCTCCT 	2
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	388
-------------------------------------------------------------TTGGCATTCTGTCCACCTC 	8
----------------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGCTTCTTCG 	1

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM415786-5994	TTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATA	up	3	0

Secondary structure

GGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATG
------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	22
-------------------------------------------------------------TTGGCATTCTGTCCACCTCCT 	3
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	291
-------------------------------------------------------------TTGGCATTCTGTCCACCTC 	3
--------------------------------------------------------------TGGCATTCTGTCCACCTCC 	1
---------------------------------------------------------------------------------------------------------------------------------AAGGAGGTGGGTATACTGCCAATA 	1
----------------------------------------------------------------------------------------------------------------------------------AGGAGGTGGGTATACTGCCAA 	1
-------------------------------------------------------------------------------------------------------------------------------------AGGTGGGTATACTGCCAATA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGCTTCTTCG 	2

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM415786-5994	TTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATA	up	3	0

Secondary structure

TTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATA
--------------------------------------CTTACAGAGATCTTTGGCATT 	1
--------------------------------------------------TTTGGCATTCTGTCCACCTCC 	22
---------------------------------------------------TTGGCATTCTGTCCACCTCCT 	3
---------------------------------------------------TTGGCATTCTGTCCACCTCC 	291
---------------------------------------------------TTGGCATTCTGTCCACCTC 	3
----------------------------------------------------TGGCATTCTGTCCACCTCC 	1
-------------------------------------------------------------------------------------------------------------------------------AGGTGGGCATACTGCCAATAG 	3
----------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGTTTCTTTG 	7
-----------------------------------------------------------------------------------------------------------------------------------------------------GATCTGTTAGGGTTTCTTTG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGTTAGGGTTTCTTTGTA 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTTAGGGTTTCTTTGTA 	1

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Arabidopsis thaliana	GSM415785	TTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATA	up	3	0

Secondary structure

TTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATA
--------------------------------------CTTACAGAGATCTTTGGCATT 	1
------------------------------------------------TCTTTGGCATTCTGTCCACCT 	1
------------------------------------------------TCTTTGGCATTCTGTCCACC 	1
--------------------------------------------------TTTGGCATTCTGTCCACCTCC 	27
--------------------------------------------------TTTGGCATTCTGTCCACCTC 	1
---------------------------------------------------TTGGCATTCTGTCCACCTCCT 	3
---------------------------------------------------TTGGCATTCTGTCCACCTCC 	464
---------------------------------------------------TTGGCATTCTGTCCACCTC 	12
----------------------------------------------------TGGCATTCTGTCCACCTCC 	13
----------------------------------------------------------------------------------------------------------------------------AGGAGGTGGGCATACTGCCAAT 	1

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Arabidopsis thaliana	GSM415785	TTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATA	up	3	0

Secondary structure

GGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATG
----------------------------------------------------------TCTTTGGCATTCTGTCCACCT 	1
----------------------------------------------------------TCTTTGGCATTCTGTCCACC 	1
------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	27
------------------------------------------------------------TTTGGCATTCTGTCCACCTC 	1
-------------------------------------------------------------TTGGCATTCTGTCCACCTCCTT 	1
-------------------------------------------------------------TTGGCATTCTGTCCACCTCCT 	3
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	464
-------------------------------------------------------------TTGGCATTCTGTCCACCTC 	12
--------------------------------------------------------------TGGCATTCTGTCCACCTCC 	13

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Arabidopsis thaliana	GSM366870	TTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATA	up	3	0

Secondary structure

GGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATG
----------------------------------------AAGATTTTCTTACAGTCATCT 	1
------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	12
-------------------------------------------------------------TTGGCATTCTGTCCACCTC 	4
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	106
-------------------------------------------------------------TTGGCATTCTGTCCACCTCCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGCTTCTTCG 	2

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Arabidopsis thaliana	GSM366870	TTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATA	up	3	0

Secondary structure

TTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATA
----------------------------AAAAGAGTCTCTTACAGAGATC 	1
--------------------------------------------------TTTGGCATTCTGTCCACCTCC 	12
---------------------------------------------------TTGGCATTCTGTCCACCTC 	4
---------------------------------------------------TTGGCATTCTGTCCACCTCC 	106
---------------------------------------------------TTGGCATTCTGTCCACCTCCT 	1
-------------------------------------------------------------------------------------------------------------------------------AGGTGGGCATACTGCCAATAGA 	1

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Arabidopsis thaliana	GSM366869	TTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATA	up	3	0

Secondary structure

TTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATA
--------------------------------------------------TTTGGCATTCTGTCCACCTCC 	7
---------------------------------------------------TTGGCATTCTGTCCACCTC 	1
---------------------------------------------------TTGGCATTCTGTCCACCTCC 	37
-------------------------------------------------------------------------------------------------------------------------------AGGTGGGCATACTGCCAATAGA 	3

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Arabidopsis thaliana	GSM366869	TTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATA	up	3	0

Secondary structure

GGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATG
------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	7
-------------------------------------------------------------TTGGCATTCTGTCCACCTC 	1
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	37
-------------------------------------------------------------------------------------------------------------------------------------AGGTGGGTATACTGCCAATAGA 	1
-------------------------------------------------------------------------------------------------------------------------------------AGGTGGGTATACTGCCAATAG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGCTTCTTCG 	1

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Arabidopsis thaliana	GSM304284	TTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATA	up	3	0

Secondary structure

TTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATA
--------------------------------------------------TTTGGCATTCTGTCCACCTCC 	23
---------------------------------------------------TTGGCATTCTGTCCACCTCC 	86
---------------------------------------------------TTGGCATTCTGTCCACCTC 	1
----------------------------------------------------TGGCATTCTGTCCACCTCC 	1

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Arabidopsis thaliana	GSM304284	TTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATA	up	3	0

Secondary structure

GGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATG
------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	23
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	86
-------------------------------------------------------------TTGGCATTCTGTCCACCTC 	1
--------------------------------------------------------------TGGCATTCTGTCCACCTCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGCTTCTTCG 	1

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Arabidopsis thaliana	GSM366866	TTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATA	up	3	0

Secondary structure

TTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATA
------------------------------------------------TCTTTGGCATTCTGTCCACC 	1
--------------------------------------------------TTTGGCATTCTGTCCACCTCCTCT 	1
--------------------------------------------------TTTGGCATTCTGTCCACCTCC 	45
---------------------------------------------------TTGGCATTCTGTCCACCTC 	1
---------------------------------------------------TTGGCATTCTGTCCACCTCC 	170

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Arabidopsis thaliana	GSM366866	TTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATA	up	3	0

Secondary structure

GGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATG
----------------------------------------------------------TCTTTGGCATTCTGTCCACC 	1
------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	45
-------------------------------------------------------------TTGGCATTCTGTCCACCTC 	1
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	170

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Arabidopsis thaliana	GSM304283	TTTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATAGA	up	3	1

Secondary structure

TTTTTGGATCTTTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATAAAGATAGTGATC
----------------------------------------------------------ATCTTTGGCATTCTGTCCACC 	2
-------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	81
-------------------------------------------------------------TTTGGCATTCTGTCCACCTC 	1
--------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	54
------------------------------------------------------------------------------------------------------------------------------------------AGGTGGGCATACTGCCAATAGA 	13
------------------------------------------------------------------------------------------------------------------------------------------AGGTGGGCATACTGCCAATAG 	8

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Arabidopsis thaliana	GSM304283	TTTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATAGA	up	3	1

Secondary structure

TGGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATGTC
---------------------------ATGAGGGTTTGACAAAGATT 	2
----------------------------------------------------------ATCTTTGGCATTCTGTCCACC 	2
-------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	81
-------------------------------------------------------------TTTGGCATTCTGTCCACCTC 	1
--------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	54
--------------------------------------------------------------------------------------------------------------------------------------AGGTGGGTATACTGCCAATAGA 	17
--------------------------------------------------------------------------------------------------------------------------------------AGGTGGGTATACTGCCAATAG 	1

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Arabidopsis thaliana	GSM304285	TTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATA	up	3	0

Secondary structure

GGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATG
------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	1
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	30
-------------------------------------------------------------------------------------------------------------------------------------AGGTGGGTATACTGCCAATAGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGCTTCTTCG 	1

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Arabidopsis thaliana	GSM304285	TTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATA	up	3	0

Secondary structure

TTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATA
--------------------------------------------------TTTGGCATTCTGTCCACCTCC 	1
---------------------------------------------------TTGGCATTCTGTCCACCTCC 	30

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Arabidopsis thaliana	GSM518432-13544	TTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATA	up	3	0

Secondary structure

GGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATG
---------------------------------------------------------ATCTTTGGCATTCTGTCCACC 	1
------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	59
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	280
-------------------------------------------------------------TTGGCATTCTGTCCACCTCCT 	1
-------------------------------------------------------------TTGGCATTCTGTCCACCTC 	3
---------------------------------------------------------------------------------------------------------------------------------AAGGAGGTGGGTATACTGCCAATA 	1
-------------------------------------------------------------------------------------------------------------------------------------AGGTGGGTATACTGCCAATAGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGCTTCTTCG 	1

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Arabidopsis thaliana	GSM518432-13544	TTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATA	up	3	0

Secondary structure

TTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATA
-----------------------------------------------ATCTTTGGCATTCTGTCCACC 	1
--------------------------------------------------TTTGGCATTCTGTCCACCTCC 	59
---------------------------------------------------TTGGCATTCTGTCCACCTCC 	280
---------------------------------------------------TTGGCATTCTGTCCACCTCCT 	1
---------------------------------------------------TTGGCATTCTGTCCACCTC 	3
----------------------------------------------------------------------------------------------------------------------------AGGAGGTGGGCATACTGCCAAT 	1
---------------------------------------------------------------------------------------------------------------------------------GTGGGCATACTGCCAATAGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGTTTCTTTG 	1

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Arabidopsis thaliana	GSM277608	TTTGGCATTCTGTCCACCTCC	AGGTGGGCATACTGCCAATAGA	up	3	1

Secondary structure

TTTTTGGATCTTTAACCTTTTTGATCATGCGGGTTTGACAAAAGAGTCTCTTACAGAGATCTTTGGCATTCTGTCCACCTCCTCTCTCTATATTTATGTGTAATAAGTGTACGTATCTACGGTGTGTTTCGTAAGAGGAGGTGGGCATACTGCCAATAGAGATCTGTTAGGGTTTCTTTGTAAAACCCCTCATGATTTGATATATAAAGATAGTGATC
-----------------------------------------------------------TCTTTGGCATTCTGTCCACC 	1
-------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	11
--------------------------------------------------------------TTGGCATTCTGTCCACCTC 	4
---------------------------------------------------------------TGGCATTCTGTCCACCTCC 	5
--------------------------------------------------------------------------------------------------------------------------------------GAGGAGGTGGGCATACTGCCAAT 	1
--------------------------------------------------------------------------------------------------------------------------------------GAGGAGGTGGGCATACTGCCAATA 	2
---------------------------------------------------------------------------------------------------------------------------------------AGGAGGTGGGCATACTGCCAAT 	2
------------------------------------------------------------------------------------------------------------------------------------------AGGTGGGCATACTGCCAATA 	1
------------------------------------------------------------------------------------------------------------------------------------------AGGTGGGCATACTGCCAATAG 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------AGATCTGTTAGGGTTTCTTTG 	3

Overlaps with: MNEST040078 MNEST047001
Overlaps with miRBase pre-miRNAs: ath-MIR394b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Arabidopsis thaliana	GSM277608	TTTGGCATTCTGTCCACCTCC	AGGTGGGTATACTGCCAATAGA	up	3	1

Secondary structure

TGGATCTTTAAACTTTTGTTCCTTTTCATGAGGGTTTGACAAAGATTTTCTTACAGTCATCTTTGGCATTCTGTCCACCTCCTTCTATACATATATGCATGTGTATATATATATGCGTTTCGTGTGAAAGAAGGAGGTGGGTATACTGCCAATAGAGATCTGTTAGGGCTTCTTCGTAAAACCCTCTTGATCTATATACAAGTTTATCAATGTC
-----------------------------------------------------------TCTTTGGCATTCTGTCCACC 	1
-------------------------------------------------------------TTTGGCATTCTGTCCACCTCC 	11
--------------------------------------------------------------TTGGCATTCTGTCCACCTC 	4
---------------------------------------------------------------TGGCATTCTGTCCACCTCC 	5
----------------------------------------------------------------------------------------------------------------------------------AAGGAGGTGGGTATACTGCCAATA 	1

Overlaps with: MNEST040077 MNEST047000
Overlaps with miRBase pre-miRNAs: ath-MIR394a
HuntMi prediction: true miRNA