miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTGGCATTCTGTCCACCTCC

selected species: Vitis vinifera



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TTGGCATTCTGTCCACCTCC AGGTGGCCAGCATGCCAAAG up 2 0


Secondary structure

GGTTTCCCAGGGGCATAGTTGCAGAGCCATTTTGGCATTCTGTCCACCTCCATGCACATCATGGGTCTATATTCTTTTGGAGGTGGCCAGCATGCCAAAGTGGCTCTGTAAATTTCTCTCTGAGAAAC
---------GGGGCATAGTTGCAGAGCCAT 	1
------------------------------TTTGGCATTCTGTCCACCTCC 	1
-------------------------------TTGGCATTCTGTCCACCTCC 	5

Overlaps with: MNEST041643 MNEST054851
Overlaps with miRBase pre-miRNAs: vvi-MIR394a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458927 TTGGCATTCTGTCCACCTCC AGGCGGCCAGGATGCCAAAT up 2 0


Secondary structure

GGATTCTCAGAGGCAATATTACAGAGCCATTTTGGCATTCTGTCCACCTCCATATATACCAATTCTTCTGAATTGGCGCCCACAAGCGTTTGGAGGCGGCCAGGATGCCAAATTGGCTCTGTAAATTTCTCTCTGAGAAGC
--------------AATATTACAGAGCCATTTTGG 	1
------------------------------TTTGGCATTCTGTCCACCTCC 	1
-------------------------------TTGGCATTCTGTCCACCTCC 	5
----------------------------------------------------------------------------------------TTTGGAGGCGGCCAGGATGCCAAA 	1
-----------------------------------------------------------------------------------------TTGGAGGCGGCCAGGATGCCAAA 	1

Overlaps with: MNEST041645 MNEST054853
Overlaps with miRBase pre-miRNAs: vvi-MIR394c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458927 TTGGCATTCTGTCCACCTCC AGGTGGGCATACTGCCAACC up 3 0


Secondary structure

ATGAATACAAGGACGCTGTTTCTTTCATATGGGTTTGACAAAGGGTTTCTCACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTGGGCATACTGCCAACCAAGCTCTGTTGGACTCTCTTTGTAAAACCCTCGTGATACCCCCCAACACCATGTCCAA
----------------------------------------AAGGGTTTCTCACAGAGTTTA 	1
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	5

Overlaps with: MNEST045291
Overlaps with miRBase pre-miRNAs: vvi-MIR394b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458930-2718 TTGGCATTCTGTCCACCTCC AGGTGGCCAGCATGCCAAAG up 2 0


Secondary structure

GGTTTCCCAGGGGCATAGTTGCAGAGCCATTTTGGCATTCTGTCCACCTCCATGCACATCATGGGTCTATATTCTTTTGGAGGTGGCCAGCATGCCAAAGTGGCTCTGTAAATTTCTCTCTGAGAAAC
-------------------------------TTGGCATTCTGTCCACCTCC 	5

Overlaps with: MNEST041643 MNEST054851
Overlaps with miRBase pre-miRNAs: vvi-MIR394a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Vitis vinifera GSM458930-2718 TTGGCATTCTGTCCACCTCC AGGTGGGCATACTGCCAACC up 3 0


Secondary structure

ATGAATACAAGGACGCTGTTTCTTTCATATGGGTTTGACAAAGGGTTTCTCACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTGGGCATACTGCCAACCAAGCTCTGTTGGACTCTCTTTGTAAAACCCTCGTGATACCCCCCAACACCATGTCCAA
----------------------------------------AAGGGTTTCTCACAGAGTTTA 	1
-------------------------------------------------------------TTGGCATTCTGTCCACCTCC 	5
-------------------------------------------------------------------------------------------------------------------------------------CAAGCTCTGTTGGACTCTCT 	1

Overlaps with: MNEST045291
Overlaps with miRBase pre-miRNAs: vvi-MIR394b
HuntMi prediction: true miRNA