miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTGGGATTTTTTAGATCAGCAG

selected species: Drosophila melanogaster



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM466487_wt_total TTGGGATTTTTTAGATCAGCAG ACTGGCCTACTAAGTCCCAACA up 4 0


Secondary structure

GCTCCAAAGAAGTCGGGTTTTGATCGCAATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGACGTTCATGTGAAGATTAGAAA
-------------------------------------------------GGTTGGGATTTTTTAGATCAGCA 	169
-------------------------------------------------GGTTGGGATTTTTTAGATCAGC 	52
-------------------------------------------------GGTTGGGATTTTTTAGATCAG 	58
-------------------------------------------------GGTTGGGATTTTTTAGATCAGCAG 	124
-------------------------------------------------GGTTGGGATTTTTTAGATCA 	6
-------------------------------------------------GGTTGGGATTTTTTAGATCAGCAGT 	5
-------------------------------------------------GGTTGGGATTTTTTAGATCAGCAGTT 	1
--------------------------------------------------GTTGGGATTTTTTAGATCAGCAG 	6
--------------------------------------------------GTTGGGATTTTTTAGATCAGC 	12
--------------------------------------------------GTTGGGATTTTTTAGATCAG 	1
--------------------------------------------------GTTGGGATTTTTTAGATCAGCA 	2
---------------------------------------------------TTGGGATTTTTTAGATCAGCAGT 	24
---------------------------------------------------TTGGGATTTTTTAGATCAGCA 	401
---------------------------------------------------TTGGGATTTTTTAGATCAGCAGTT 	1
---------------------------------------------------TTGGGATTTTTTAGATCAGCAG 	1261
---------------------------------------------------TTGGGATTTTTTAGATCAG 	27
---------------------------------------------------TTGGGATTTTTTAGATCAGC 	73
----------------------------------------------------TGGGATTTTTTAGATCAGC 	6
----------------------------------------------------TGGGATTTTTTAGATCAGCA 	38
----------------------------------------------------TGGGATTTTTTAGATCAGCAGTT 	13
----------------------------------------------------TGGGATTTTTTAGATCAGCAGT 	137
----------------------------------------------------TGGGATTTTTTAGATCAGCAG 	409
-------------------------------------------------------------------------TTATTGCTATATAGCCATATTTAT 	1
-------------------------------------------------------------------------TTATTGCTATATAGCCATATTT 	1
-------------------------------------------------------------------------TTATTGCTATATAGCCATATT 	2
-------------------------------------------------------------------------TTATTGCTATATAGCCATATTTATAA 	1
--------------------------------------------------------------------------TATTGCTATATAGCCATATTTATAA 	1
--------------------------------------------------------------------------TATTGCTATATAGCCATATT 	2
--------------------------------------------------------------------------TATTGCTATATAGCCATATTT 	7
--------------------------------------------------------------------------TATTGCTATATAGCCATATTTATA 	1
--------------------------------------------------------------------------TATTGCTATATAGCCATATTTAT 	1
----------------------------------------------------------------------------TTGCTATATAGCCATATTTATAA 	1
--------------------------------------------------------------------------------------------------------CTACTGGCCTACTAAGTCCCAA 	1
--------------------------------------------------------------------------------------------------------CTACTGGCCTACTAAGTCCCAAC 	1
---------------------------------------------------------------------------------------------------------TACTGGCCTACTAAGTCCCAA 	99
---------------------------------------------------------------------------------------------------------TACTGGCCTACTAAGTCCC 	9
---------------------------------------------------------------------------------------------------------TACTGGCCTACTAAGTCCCAACA 	6
---------------------------------------------------------------------------------------------------------TACTGGCCTACTAAGTCCCAAC 	81
---------------------------------------------------------------------------------------------------------TACTGGCCTACTAAGTCCCA 	85
----------------------------------------------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACA 	26
----------------------------------------------------------------------------------------------------------ACTGGCCTACTAAGTCCCA 	4
----------------------------------------------------------------------------------------------------------ACTGGCCTACTAAGTCCCAA 	1
----------------------------------------------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACAT 	19
----------------------------------------------------------------------------------------------------------ACTGGCCTACTAAGTCCCAAC 	5
-----------------------------------------------------------------------------------------------------------CTGGCCTACTAAGTCCCAACATA 	1


Overlaps with: MNEST036397 MNEST036398
Overlaps with miRBase pre-miRNAs: dme-mir-193
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TTGGGATTTTTTAGATCAGCAG ACTGGCCTACTAAGTCCCAACA up 4 0


Secondary structure

GCTCCAAAGAAGTCGGGTTTTGATCGCAATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGACGTTCATGTGAAGATTAGAAA
-------------------------------------------------GGTTGGGATTTTTTAGATCAGCA 	326
-------------------------------------------------GGTTGGGATTTTTTAGATCAGC 	167
-------------------------------------------------GGTTGGGATTTTTTAGATC 	6
-------------------------------------------------GGTTGGGATTTTTTAGATCAG 	257
-------------------------------------------------GGTTGGGATTTTTTAGATCAGCAG 	144
-------------------------------------------------GGTTGGGATTTTTTAGATCA 	24
-------------------------------------------------GGTTGGGATTTTTTAGATCAGCAGT 	1
-------------------------------------------------GGTTGGGATTTTTTAGATCAGCAGTT 	2
--------------------------------------------------GTTGGGATTTTTTAGATCAGCAG 	3
--------------------------------------------------GTTGGGATTTTTTAGATCAGC 	12
--------------------------------------------------GTTGGGATTTTTTAGATCAG 	4
--------------------------------------------------GTTGGGATTTTTTAGATCAGCA 	8
---------------------------------------------------TTGGGATTTTTTAGATCAGCAGT 	129
---------------------------------------------------TTGGGATTTTTTAGATCAGCA 	1144
---------------------------------------------------TTGGGATTTTTTAGATCAGCAGTT 	11
---------------------------------------------------TTGGGATTTTTTAGATCAGCAG 	2693
---------------------------------------------------TTGGGATTTTTTAGATCAG 	103
---------------------------------------------------TTGGGATTTTTTAGATCAGC 	436
----------------------------------------------------TGGGATTTTTTAGATCAGC 	53
----------------------------------------------------TGGGATTTTTTAGATCAGCA 	113
----------------------------------------------------TGGGATTTTTTAGATCAGCAGTT 	26
----------------------------------------------------TGGGATTTTTTAGATCAGCAGT 	426
----------------------------------------------------TGGGATTTTTTAGATCAGCAGTTA 	1
----------------------------------------------------TGGGATTTTTTAGATCAGCAG 	1163
-----------------------------------------------------GGGATTTTTTAGATCAGCAGT 	4
-----------------------------------------------------GGGATTTTTTAGATCAGCAG 	7
--------------------------------------------------------------------------TATTGCTATATAGCCATATTT 	3
---------------------------------------------------------------------------------------------------------TACTGGCCTACTAAGTCCCAA 	109
---------------------------------------------------------------------------------------------------------TACTGGCCTACTAAGTCCC 	8
---------------------------------------------------------------------------------------------------------TACTGGCCTACTAAGTCCCAACA 	2
---------------------------------------------------------------------------------------------------------TACTGGCCTACTAAGTCCCAAC 	53
---------------------------------------------------------------------------------------------------------TACTGGCCTACTAAGTCCCA 	213
----------------------------------------------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACA 	7
----------------------------------------------------------------------------------------------------------ACTGGCCTACTAAGTCCCA 	4
----------------------------------------------------------------------------------------------------------ACTGGCCTACTAAGTCCCAA 	7
----------------------------------------------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACAT 	13


Overlaps with: MNEST036397 MNEST036398
Overlaps with miRBase pre-miRNAs: dme-mir-193
HuntMi prediction: true miRNA