miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTGGTCCCCTTCAACCAGCTGT

selected species: Drosophila melanogaster

19 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM360257-14325	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	5
----------------------AGCTGGTTGACATCGGGTCAGA 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	3
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	32
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	1
---------------------------------------------------------------GTCCCCTTCAACCAGCTGT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399107-16288	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	19
----------------------AGCTGGTTGACATCGGGTCAGA 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGTAG 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	344
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	1831
------------------------------------------------------------TTGGTCCCCTTCAACCAGC 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	53
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGTA 	9
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTGT 	5

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM399106-16287	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	5
----------------------AGCTGGTTGACATCGGGTCAGA 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	114
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	583
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGTA 	2
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	28
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTG 	1
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTGT 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM466487_wt_total	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	149
----------------------AGCTGGTTGACATCGGGTCAGA 	11
----------------------AGCTGGTTGACATCGGGTCAG 	6
-----------------------GCTGGTTGACATCGGGTCAGAT 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGC 	2
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	1020
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	9797
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGTA 	56
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	247
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTGTA 	1
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTG 	10
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTGT 	94
-------------------------------------------------------------TGGTCCCCTTCAACCAGCT 	5
--------------------------------------------------------------GGTCCCCTTCAACCAGCTGT 	5
--------------------------------------------------------------GGTCCCCTTCAACCAGCTG 	1
---------------------------------------------------------------GTCCCCTTCAACCAGCTGT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM399105-16286	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	24
----------------------AGCTGGTTGACATCGGGTCAGA 	2
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	33
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	263
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	5

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360262-14327	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	7
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	39
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	180
------------------------------------------------------------TTGGTCCCCTTCAACCAGC 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	7

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM385822-16273	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	6

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM360256-14324	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	12
----------------------AGCTGGTTGACATCGGGTCAGA 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	5
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	45
------------------------------------------------------------TTGGTCCCCTTCAACCAGC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM466496_r2d2_homozygotes_untreated	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	361
----------------------AGCTGGTTGACATCGGGTCAGA 	32
----------------------AGCTGGTTGACATCGGGTCA 	3
----------------------AGCTGGTTGACATCGGGTCAG 	8
-----------------------GCTGGTTGACATCGGGTCAGAT 	3
--------------------------GGTTGACATCGGGTCAGAT 	2
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	888
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	9381
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGTA 	64
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	450
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTG 	3
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTGT 	16
--------------------------------------------------------------GGTCCCCTTCAACCAGCTGT 	9
--------------------------------------------------------------GGTCCCCTTCAACCAGCTG 	3

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM286605-9793	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	2
------------------------------------------------------------TTGGTCCCCTTCAACCAGC 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	5
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	47
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM360260-14326	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	15
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	12
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	144

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM322543-14323	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	223
----------------------AGCTGGTTGACATCGGGTCAGA 	19
-----------------------GCTGGTTGACATCGGGTCAGAT 	2
------------------------CTGGTTGACATCGGGTCAGAT 	13
-----------------------------------------------------------TTTGGTCCCCTTCAACCAGCTGT 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	4519
------------------------------------------------------------TTGGTCCCCTTCAACCAGC 	23
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	1271
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGTA 	64
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	13900
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTGT 	22
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTG 	4
--------------------------------------------------------------GGTCCCCTTCAACCAGCTGT 	1
---------------------------------------------------------------GTCCCCTTCAACCAGCTGT 	9

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Drosophila melanogaster	GSM286607-9796	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	6
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	27

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Drosophila melanogaster	GSM286604-9792	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	5
----------------------AGCTGGTTGACATCGGGTCAGA 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	107
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	406
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGTA 	2
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	20

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Drosophila melanogaster	GSM385744-16261	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	3
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	19
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Drosophila melanogaster	GSM322208-14317	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	3
----------------------AGCTGGTTGACATCGGGTC 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	4
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	28

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Drosophila melanogaster	GSM385748-16264	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	8
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	36

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Drosophila melanogaster	GSM399110-16285	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAGAT 	4
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	16

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Drosophila melanogaster	GSM466492_dcr-2_homozygotes_untreated	TTGGTCCCCTTCAACCAGCTGT	AGCTGGTTGACATCGGGTCAGAT	down	3	3

Secondary structure

TTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAA
----------------------AGCTGGTTGACATCGGGTCAG 	4
----------------------AGCTGGTTGACATCGGGTCAGAT 	99
----------------------AGCTGGTTGACATCGGGTCAGA 	6
-----------------------------------------------------------TTTGGTCCCCTTCAACCAGCTGT 	1
-----------------------------------------------------------TTTGGTCCCCTTCAACCAGCTG 	1
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTG 	2432
------------------------------------------------------------TTGGTCCCCTTCAACCAGC 	4
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGTA 	46
------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	157
------------------------------------------------------------TTGGTCCCCTTCAACCAGCTGT 	7777
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTGT 	78
-------------------------------------------------------------TGGTCCCCTTCAACCAGCTG 	28
-------------------------------------------------------------TGGTCCCCTTCAACCAGCT 	3
--------------------------------------------------------------GGTCCCCTTCAACCAGCTGT 	4
--------------------------------------------------------------GGTCCCCTTCAACCAGCTG 	1
---------------------------------------------------------------GTCCCCTTCAACCAGCTGT 	4

HuntMi prediction: true miRNA