miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTGGTGTTACTTCTTACAGTGA

selected species: Drosophila melanogaster



15 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM360257-14325 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
-------------------------------------------------------------CTTGGTGTTACTTCTTACAGTGA 	1
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	2
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	103

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399107-16288 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	17

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM399106-16287 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	8
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	3

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM466487_wt_total TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
----------------------GCTGTAAATTGTAATCATCAAAGC 	13
----------------------GCTGTAAATTGTAATCATCAA 	13
----------------------GCTGTAAATTGTAATCATCAAAG 	4
----------------------GCTGTAAATTGTAATCATCA 	16
----------------------GCTGTAAATTGTAATCATCAAA 	7
-------------------------------------------------------------CTTGGTGTTACTTCTTACAGTGA 	1
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	145

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM399105-16286 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	1
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	41

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM360262-14327 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	1
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	17
--------------------------------------------------------------TTGGTGTTACTTCTTACAGT 	1

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM360256-14324 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
----------------------GCTGTAAATTGTAATCATCAAAGC 	1
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	2
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	75
---------------------------------------------------------------TGGTGTTACTTCTTACAGTGA 	1

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
----------------------GCTGTAAATTGTAATCATC 	3
----------------------GCTGTAAATTGTAATCATCAAAGC 	32
----------------------GCTGTAAATTGTAATCATCAA 	17
----------------------GCTGTAAATTGTAATCATCAAAG 	32
----------------------GCTGTAAATTGTAATCATCA 	27
----------------------GCTGTAAATTGTAATCATCAAA 	13
----------------------GCTGTAAATTGTAATCATCAAAGCG 	2
-------------------------------------------------------------CTTGGTGTTACTTCTTACAGTGA 	2
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	243
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	5

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM286605-9793 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	9

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM360260-14326 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
-------------------------------------------------------------CTTGGTGTTACTTCTTACAGTGA 	1
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	15

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM322543-14323 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
----------------------GCTGTAAATTGTAATCATCAAAGC 	16
----------------------GCTGTAAATTGTAATCATCA 	2
----------------------GCTGTAAATTGTAATCATCAA 	25
----------------------GCTGTAAATTGTAATCATCAAAG 	1
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	356
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	30

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM286604-9792 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	3
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	24

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Drosophila melanogaster GSM322208-14317 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	11
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	1
--------------------------------------------------------------TTGGTGTTACTTCTTACAG 	3

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Drosophila melanogaster GSM399110-16285 TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	2
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	44

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated TTGGTGTTACTTCTTACAGTGA GCTGTAAATTGTAATCATCAAAG down 3 1


Secondary structure

AATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACA
----------------------GCTGTAAATTGTAATCATCAAAGC 	18
----------------------GCTGTAAATTGTAATCATCA 	18
----------------------GCTGTAAATTGTAATCATCAA 	6
----------------------GCTGTAAATTGTAATCATC 	1
----------------------GCTGTAAATTGTAATCATCAAA 	5
----------------------GCTGTAAATTGTAATCATCAAAG 	8
-------------------------------------------------------------CTTGGTGTTACTTCTTACAGTGA 	2
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTGA 	127
--------------------------------------------------------------TTGGTGTTACTTCTTACAGTG 	1
-----------------------------------------------------------------GTGTTACTTCTTACAGTGA 	1

Overlaps with: MNEST036517 MNEST036518
Overlaps with miRBase pre-miRNAs: dme-mir-971
HuntMi prediction: true miRNA