miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTGTCCCATTCTAGTTTAGCT

selected species: Oryza sativa



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM520639-18678 TTGTCCCATTCTAGTTTAGCT TTGAGCTAGAATGGGTCAATG up 1 0


Secondary structure

TAGGGAGTAGGGATTGGCACAGGTCACTATATGGGTACCCATTGTCCCATTCTAGTTTAGCTAAATGAACTACTACAGGGAGTAAATTCTATGGACCAGGAAAAGTGAGTTTTAGTTAATTTAGTTGAGCTAGAATGGGTCAATGGGTACCTATGAAGTGACCTCAGTACATCCCTAGTTAGA
----------------------------------------ATTGTCCCATTCTAGTTTAGC 	2
-----------------------------------------TTGTCCCATTCTAGTTTAGCT 	5
----------------------------------------------------------------------------------------------------------------------ATTTAGTTGAGCTAGAATGGGTC 	2
----------------------------------------------------------------------------------------------------------------------ATTTAGTTGAGCTAGAATGGGTCA 	3
---------------------------------------------------------------------------------------------------------------------------------CTAGAATGGGTCAATGGGTAC 	5
----------------------------------------------------------------------------------------------------------------------------------TAGAATGGGTCAATGGGTA 	5
-----------------------------------------------------------------------------------------------------------------------------------AGAATGGGTCAATGGGTACCT 	1

Overlaps with: MNEST042383 MNEST049198
Overlaps with miRBase pre-miRNAs: osa-MIR2863a
HuntMi prediction: true miRNA