miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTGTCGCAGGAGAGACGGCACT

selected species: Vitis vinifera

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458930-2718	TTGTCGCAGGAGAGACGGCACT	CGCCGCTCTCCTGTGACAAGA	up	2	1

Secondary structure

GAAAGAGGGGTTGGGGGTTTCTTGTCGCAGGAGAGACGGCACTTGCTCTTGTGTAGCAAATTGCAAGCGGCAATCGCCGCTCTCCTGTGACAAGATACCCTTCAGCTTCTTTC
---------------------TTGTCGCAGGAGAGACGGCACTT 	12
---------------------TTGTCGCAGGAGAGACGGCACT 	26
---------------------TTGTCGCAGGAGAGACGGCAC 	1
----------------------TGTCGCAGGAGAGACGGCACTT 	15
----------------------TGTCGCAGGAGAGACGGCACT 	1
-------------------------------------------------------------------------TCGCCGCTCTCCTGTGACAAG 	1

Overlaps with: MNEST041704
Overlaps with miRBase pre-miRNAs: vvi-MIR3627
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458929-2717	TTGTCGCAGGAGAGACGGCACT	CGCCGCTCTCCTGTGACAAGA	up	2	1

Secondary structure

GAAAGAGGGGTTGGGGGTTTCTTGTCGCAGGAGAGACGGCACTTGCTCTTGTGTAGCAAATTGCAAGCGGCAATCGCCGCTCTCCTGTGACAAGATACCCTTCAGCTTCTTTC
---------------------TTGTCGCAGGAGAGACGGCACTT 	1
---------------------TTGTCGCAGGAGAGACGGCACT 	5
----------------------TGTCGCAGGAGAGACGGCACTT 	5
-------------------------CGCAGGAGAGACGGCACTT 	1

Overlaps with: MNEST041704
Overlaps with miRBase pre-miRNAs: vvi-MIR3627
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458928-2716	TTGTCGCAGGAGAGACGGCACT	CGCCGCTCTCCTGTGACAAGA	up	2	1

Secondary structure

GAAAGAGGGGTTGGGGGTTTCTTGTCGCAGGAGAGACGGCACTTGCTCTTGTGTAGCAAATTGCAAGCGGCAATCGCCGCTCTCCTGTGACAAGATACCCTTCAGCTTCTTTC
---------------------TTGTCGCAGGAGAGACGGCACTT 	2
---------------------TTGTCGCAGGAGAGACGGCACT 	6
----------------------TGTCGCAGGAGAGACGGCACTT 	5

Overlaps with: MNEST041704
Overlaps with miRBase pre-miRNAs: vvi-MIR3627
HuntMi prediction: true miRNA