miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTAGAATTCCTACGCTTTACC

selected species: Bombyx mori



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTAAAAC up 6 0


Secondary structure

AATAGAAACGTCGGGAATGCAGCCTTTTTGCTTTAGAATTCCTACGCTTTACCGTTGCCAAGTAGTTGGGCAAAGCGTTTGGATTCTAAAACGAAATAACTGCCACGCCTCCCCGACGCT
-------------------------------TTTAGAATTCCTACGCTTTACC 	9
-------------------------------TTTAGAATTCCTACGCTTTACCG 	1
----------------------------------------------------------------------CAAAGCGTTTGGATTCTAA 	2
----------------------------------------------------------------------CAAAGCGTTTGGATTCTAAAA 	2
----------------------------------------------------------------------CAAAGCGTTTGGATTCTAAAAC 	1
----------------------------------------------------------------------CAAAGCGTTTGGATTCTAAA 	1

Overlaps with: MNEST035585
Overlaps with miRBase pre-miRNAs: bmo-mir-1926 bmo-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449726_Anterior_silkgland_clean TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTAAAAC up 6 0


Secondary structure

AATAGAAACGTCGGGAATGCAGCCTTTTTGCTTTAGAATTCCTACGCTTTACCGTTGCCAAGTAGTTGGGCAAAGCGTTTGGATTCTAAAACGAAATAACTGCCACGCCTCCCCGACGCT
-------------------------------TTTAGAATTCCTACGCTTTACC 	197
-------------------------------TTTAGAATTCCTACGCTTTAC 	9
-------------------------------TTTAGAATTCCTACGCTTTA 	2
--------------------------------TTAGAATTCCTACGCTTTACC 	2
---------------------------------TAGAATTCCTACGCTTTACC 	1
----------------------------------------------------------------------CAAAGCGTTTGGATTCTAAAAC 	18
----------------------------------------------------------------------CAAAGCGTTTGGATTCTAAAA 	9
----------------------------------------------------------------------CAAAGCGTTTGGATTCTAAA 	8
----------------------------------------------------------------------CAAAGCGTTTGGATTCTAA 	7
-----------------------------------------------------------------------AAAGCGTTTGGATTCTAAAAC 	1

Overlaps with: MNEST035585
Overlaps with miRBase pre-miRNAs: bmo-mir-1926 bmo-mir-927
HuntMi prediction: true miRNA