miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTTAGAATTCCTACGCTTTACC

selected species: Drosophila melanogaster



18 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM360257-14325 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	1
-----------TTTAGAATTCCTACGCTTTACCG 	3
-----------TTTAGAATTCCTACGCTTTACC 	10
------------TTAGAATTCCTACGCTTTACC 	1


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399107-16288 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	6
-----------TTTAGAATTCCTACGCTTTACCG 	5
-----------TTTAGAATTCCTACGCTTTACC 	120
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	6


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM399106-16287 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	1
-----------TTTAGAATTCCTACGCTTTACCG 	3
-----------TTTAGAATTCCTACGCTTTACC 	56
--------------------------------------------------GCAAAGCGTTTGGATTCTGAA 	2
---------------------------------------------------CAAAGCGTTTGGATTCTGAAA 	2
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	3


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM466487_wt_total TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTACCGT 	1
-----------TTTAGAATTCCTACGCTTTACCG 	203
-----------TTTAGAATTCCTACGCTTTA 	40
-----------TTTAGAATTCCTACGCTTTAC 	313
-----------TTTAGAATTCCTACGCTTT 	9
-----------TTTAGAATTCCTACGCTTTACC 	2784
------------TTAGAATTCCTACGCTTTACC 	33
------------TTAGAATTCCTACGCTTTAC 	2
------------TTAGAATTCCTACGCTTTACCG 	4
-------------TAGAATTCCTACGCTTTACC 	1
------------------------------------------------CGGCAAAGCGTTTGGATTCT 	1
--------------------------------------------------GCAAAGCGTTTGGATTCTGAA 	2
--------------------------------------------------GCAAAGCGTTTGGATTCTGAAA 	9
--------------------------------------------------GCAAAGCGTTTGGATTCTGAAAC 	15
---------------------------------------------------CAAAGCGTTTGGATTCTGAAA 	19
---------------------------------------------------CAAAGCGTTTGGATTCTGA 	4
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	259
---------------------------------------------------CAAAGCGTTTGGATTCTGAA 	1
----------------------------------------------------AAAGCGTTTGGATTCTGAAAC 	4
------------------------------------------------------AGCGTTTGGATTCTGAAAC 	1


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM399105-16286 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	6
-----------TTTAGAATTCCTACGCTTTACCG 	2
-----------TTTAGAATTCCTACGCTTTACC 	97
------------TTAGAATTCCTACGCTTTACCG 	1
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	6


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM360262-14327 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	4
-----------TTTAGAATTCCTACGCTTTA 	1
-----------TTTAGAATTCCTACGCTTTACCG 	7
-----------TTTAGAATTCCTACGCTTTACC 	97
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	7


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM385822-16273 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	2
-----------TTTAGAATTCCTACGCTTTACC 	8
---------------------------------------------------CAAAGCGTTTGGATTCTGAA 	1


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM360256-14324 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTACCG 	3
-----------TTTAGAATTCCTACGCTTTACC 	16
--------------------------------------------------GCAAAGCGTTTGGATTCTGAAA 	1
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	5


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTACCGT 	2
-----------TTTAGAATTCCTACGCTTTACCG 	319
-----------TTTAGAATTCCTACGCTTTA 	69
-----------TTTAGAATTCCTACGCTTTAC 	658
-----------TTTAGAATTCCTACGCTTT 	18
-----------TTTAGAATTCCTACGCTTTACC 	4555
------------TTAGAATTCCTACGCTTTACC 	4
------------TTAGAATTCCTACGCTTTAC 	4
------------TTAGAATTCCTACGCTTTACCG 	3
--------------------------------------------------GCAAAGCGTTTGGATTCTGAA 	5
--------------------------------------------------GCAAAGCGTTTGGATTCTGAAA 	28
--------------------------------------------------GCAAAGCGTTTGGATTCTGA 	2
--------------------------------------------------GCAAAGCGTTTGGATTCTGAAAC 	3
---------------------------------------------------CAAAGCGTTTGGATTCTGAAA 	58
---------------------------------------------------CAAAGCGTTTGGATTCTGA 	5
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	269
---------------------------------------------------CAAAGCGTTTGGATTCTGAA 	2
----------------------------------------------------AAAGCGTTTGGATTCTGAAAC 	3
----------------------------------------------------AAAGCGTTTGGATTCTGAAA 	2
-----------------------------------------------------AAGCGTTTGGATTCTGAAAC 	3


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM286605-9793 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTACC 	21


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM360260-14326 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	2
-----------TTTAGAATTCCTACGCTTTACCG 	5
-----------TTTAGAATTCCTACGCTTTACC 	46
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	15


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM322543-14323 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	285
-----------TTTAGAATTCCTACGCTTT 	7
-----------TTTAGAATTCCTACGCTTTA 	31
-----------TTTAGAATTCCTACGCTTTACCG 	308
-----------TTTAGAATTCCTACGCTTTACC 	5824
-----------TTTAGAATTCCTACGCTTTACCGT 	3
------------TTAGAATTCCTACGCTTTACC 	17
------------TTAGAATTCCTACGCTTTAC 	1
-------------TAGAATTCCTACGCTTTACC 	10
--------------AGAATTCCTACGCTTTACC 	1
--------------------------------------------------GCAAAGCGTTTGGATTCTGAAAC 	3
--------------------------------------------------GCAAAGCGTTTGGATTCTGA 	2
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	213
---------------------------------------------------CAAAGCGTTTGGATTCTGAAA 	41
---------------------------------------------------CAAAGCGTTTGGATTCTGAA 	1


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Drosophila melanogaster GSM286604-9792 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	8
-----------TTTAGAATTCCTACGCTTTACCG 	3
-----------TTTAGAATTCCTACGCTTTACC 	70
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	2


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Drosophila melanogaster GSM385744-16261 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	6
-----------TTTAGAATTCCTACGCTTTACC 	21


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Drosophila melanogaster GSM322208-14317 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	1
-----------TTTAGAATTCCTACGCTTTACCG 	2
-----------TTTAGAATTCCTACGCTTT 	1
-----------TTTAGAATTCCTACGCTTTACC 	13
--------------------------------------------------GCAAAGCGTTTGGATTCTGA 	1
---------------------------------------------------CAAAGCGTTTGGATTCTGAAA 	1
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	2


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Drosophila melanogaster GSM385748-16264 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTACC 	34
-----------TTTAGAATTCCTACGCTTTAC 	9


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Drosophila melanogaster GSM399110-16285 TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	2
-----------TTTAGAATTCCTACGCTTTACC 	21


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated TTTAGAATTCCTACGCTTTACC CAAAGCGTTTGGATTCTGAAAC up 3 0


Secondary structure

TGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGA
-----------TTTAGAATTCCTACGCTTTAC 	226
-----------TTTAGAATTCCTACGCTTT 	10
-----------TTTAGAATTCCTACGCTTTA 	31
-----------TTTAGAATTCCTACGCTTTACCG 	149
-----------TTTAGAATTCCTACGCTTTACC 	1534
-----------TTTAGAATTCCTACGCTTTACCGT 	2
------------TTAGAATTCCTACGCTTTACCG 	5
------------TTAGAATTCCTACGCTTTACC 	43
------------TTAGAATTCCTACGCTTTA 	3
------------TTAGAATTCCTACGCTTTAC 	5
-------------TAGAATTCCTACGCTTTACC 	9
--------------------------------------------------GCAAAGCGTTTGGATTCTGAAA 	8
--------------------------------------------------GCAAAGCGTTTGGATTCTGAAAC 	9
--------------------------------------------------GCAAAGCGTTTGGATTCTGA 	2
---------------------------------------------------CAAAGCGTTTGGATTCTGAAAC 	162
---------------------------------------------------CAAAGCGTTTGGATTCTGAAA 	21
---------------------------------------------------CAAAGCGTTTGGATTCTGAAACC 	1
---------------------------------------------------CAAAGCGTTTGGATTCTGAA 	6
----------------------------------------------------AAAGCGTTTGGATTCTGAAAC 	5
------------------------------------------------------AGCGTTTGGATTCTGAAAC 	1


Overlaps with: MNEST036477 MNEST036478
Overlaps with miRBase pre-miRNAs: dme-mir-927
HuntMi prediction: true miRNA