miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTTAGGCAGAGCACTCGTACAG

selected species: Mus musculus



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539848 TTTAGGCAGAGCACTCGTACAG ATATGAGTATTCTGCCTAAATG down 2 0


Secondary structure

TAGGCAGAATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAATCAGGAAA
----------------------ATATGAGTATTCTGCCTAAAT 	3
----------------------ATATGAGTATTCTGCCTAAATGT 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGTAC 	2
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGT 	5
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACA 	2
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAG 	28
-----------------------------------------------------------TTTAGGCAGAGCACTCGTA 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTAC 	5
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGT 	3
-------------------------------------------------------------TAGGCAGAGCACTCGTACAGTA 	1

Overlaps with: MNEST032452
Overlaps with miRBase pre-miRNAs: mmu-mir-1948
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539872 TTTAGGCAGAGCACTCGTACAG ATATGAGTATTCTGCCTAAATG down 2 0


Secondary structure

TAGGCAGAATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAATCAGGAAA
----------------------ATATGAGTATTCTGCCTAAAT 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGTAC 	3
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACA 	3
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAG 	27
-----------------------------------------------------------TTTAGGCAGAGCACTCGTAC 	9
-----------------------------------------------------------TTTAGGCAGAGCACTCGTA 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGT 	6
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGT 	4
------------------------------------------------------------TTAGGCAGAGCACTCGTACAG 	2

Overlaps with: MNEST032452
Overlaps with miRBase pre-miRNAs: mmu-mir-1948
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539861 TTTAGGCAGAGCACTCGTACAG ATATGAGTATTCTGCCTAAATG down 2 0


Secondary structure

TAGGCAGAATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAATCAGGAAA
---------------------TATATGAGTATTCTGCCTAAA 	1
----------------------ATATGAGTATTCTGCCTAAAT 	2
----------------------ATATGAGTATTCTGCCTAAA 	2
----------------------ATATGAGTATTCTGCCTAAATGT 	1
----------------------ATATGAGTATTCTGCCTAAATG 	1
----------------------ATATGAGTATTCTGCCTAA 	2
---------------------------------------------------------CATTTAGGCAGAGCACTCGTAC 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGTAC 	7
----------------------------------------------------------ATTTAGGCAGAGCACTCGT 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGTACA 	4
----------------------------------------------------------ATTTAGGCAGAGCACTCGTA 	24
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGT 	32
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACA 	58
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAG 	226
-----------------------------------------------------------TTTAGGCAGAGCACTCGTA 	82
-----------------------------------------------------------TTTAGGCAGAGCACTCGTAC 	53
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGTA 	1
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGT 	17
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGTA 	3
------------------------------------------------------------TTAGGCAGAGCACTCGTACAG 	15
------------------------------------------------------------TTAGGCAGAGCACTCGTACA 	2
-------------------------------------------------------------TAGGCAGAGCACTCGTACAGTA 	2
-------------------------------------------------------------TAGGCAGAGCACTCGTACAGTAA 	2
-------------------------------------------------------------TAGGCAGAGCACTCGTACAGT 	3

Overlaps with: MNEST032452
Overlaps with miRBase pre-miRNAs: mmu-mir-1948
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539853 TTTAGGCAGAGCACTCGTACAG ATATGAGTATTCTGCCTAAATG down 2 0


Secondary structure

TAGGCAGAATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAATCAGGAAA
----------------------ATATGAGTATTCTGCCTAAA 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGTACA 	2
----------------------------------------------------------ATTTAGGCAGAGCACTCGTAC 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGTA 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGTAA 	2
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGT 	13
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACA 	6
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAG 	47
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGT 	2
------------------------------------------------------------TTAGGCAGAGCACTCGTACA 	1
-------------------------------------------------------------TAGGCAGAGCACTCGTACAGTAA 	1

Overlaps with: MNEST032452
Overlaps with miRBase pre-miRNAs: mmu-mir-1948
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539871 TTTAGGCAGAGCACTCGTACAG ATATGAGTATTCTGCCTAAATG down 2 0


Secondary structure

TAGGCAGAATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAATCAGGAAA
---------------------TATATGAGTATTCTGCCTAAAT 	1
----------------------ATATGAGTATTCTGCCTAAATGTG 	1
----------------------ATATGAGTATTCTGCCTAAATGT 	14
----------------------ATATGAGTATTCTGCCTAAATG 	9
----------------------ATATGAGTATTCTGCCTAAAT 	3
----------------------ATATGAGTATTCTGCCTAA 	1
---------------------------------------------------------CATTTAGGCAGAGCACTCGTAC 	1
---------------------------------------------------------CATTTAGGCAGAGCACTCGTA 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGTACAG 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGTACA 	15
----------------------------------------------------------ATTTAGGCAGAGCACTCGTAC 	2
----------------------------------------------------------ATTTAGGCAGAGCACTCGTA 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGT 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGTAA 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGTA 	9
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGT 	146
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAG 	254
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACA 	35
-----------------------------------------------------------TTTAGGCAGAGCACTCGTAC 	11
-----------------------------------------------------------TTTAGGCAGAGCACTCGTA 	19
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGTAA 	4
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGTA 	5
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGT 	31
------------------------------------------------------------TTAGGCAGAGCACTCGTACAG 	4
------------------------------------------------------------TTAGGCAGAGCACTCGTACA 	4
------------------------------------------------------------TTAGGCAGAGCACTCGTAC 	1
-------------------------------------------------------------TAGGCAGAGCACTCGTACAGTAA 	3
-------------------------------------------------------------TAGGCAGAGCACTCGTACAGTA 	1

Overlaps with: MNEST032452
Overlaps with miRBase pre-miRNAs: mmu-mir-1948
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539878 TTTAGGCAGAGCACTCGTACAG ATATGAGTATTCTGCCTAAATG down 2 0


Secondary structure

TAGGCAGAATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAATCAGGAAA
----------------------------------------------------------ATTTAGGCAGAGCACTCGTACA 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGTA 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGT 	4
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAG 	6
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACA 	1
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGT 	3

Overlaps with: MNEST032452
Overlaps with miRBase pre-miRNAs: mmu-mir-1948
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539857 TTTAGGCAGAGCACTCGTACAG ATATGAGTATTCTGCCTAAATG down 2 0


Secondary structure

TAGGCAGAATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAATCAGGAAA
----------------------------------------------------------ATTTAGGCAGAGCACTCGTAC 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGT 	7
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAG 	21
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACA 	2
-----------------------------------------------------------TTTAGGCAGAGCACTCGTAC 	7
-----------------------------------------------------------TTTAGGCAGAGCACTCGTA 	5
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGT 	1
------------------------------------------------------------TTAGGCAGAGCACTCGTACAG 	1

Overlaps with: MNEST032452
Overlaps with miRBase pre-miRNAs: mmu-mir-1948
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539876 TTTAGGCAGAGCACTCGTACAG ATATGAGTATTCTGCCTAAATG down 2 0


Secondary structure

TAGGCAGAATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAATCAGGAAA
----------------------------------------------------------ATTTAGGCAGAGCACTCGTACA 	2
----------------------------------------------------------ATTTAGGCAGAGCACTCGTAC 	2
----------------------------------------------------------ATTTAGGCAGAGCACTCGTA 	4
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGT 	9
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAG 	28
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACA 	3
-----------------------------------------------------------TTTAGGCAGAGCACTCGTAC 	6
-----------------------------------------------------------TTTAGGCAGAGCACTCGTA 	4
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGTA 	1
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGT 	5
-------------------------------------------------------------TAGGCAGAGCACTCGTACAGT 	1

Overlaps with: MNEST032452
Overlaps with miRBase pre-miRNAs: mmu-mir-1948
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Mus musculus GSM539854 TTTAGGCAGAGCACTCGTACAG ATATGAGTATTCTGCCTAAATG down 2 0


Secondary structure

TAGGCAGAATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAATCAGGAAA
----------------------ATATGAGTATTCTGCCTAAATG 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGT 	8
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAG 	22
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACA 	5
-----------------------------------------------------------TTTAGGCAGAGCACTCGTAC 	3
-----------------------------------------------------------TTTAGGCAGAGCACTCGTA 	2
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGTA 	1
------------------------------------------------------------TTAGGCAGAGCACTCGTACAGT 	4
------------------------------------------------------------TTAGGCAGAGCACTCGTACAG 	1
------------------------------------------------------------TTAGGCAGAGCACTCGTACA 	1

Overlaps with: MNEST032452
Overlaps with miRBase pre-miRNAs: mmu-mir-1948
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Mus musculus GSM539874 TTTAGGCAGAGCACTCGTACAG ATATGAGTATTCTGCCTAAATG down 2 0


Secondary structure

TAGGCAGAATTCTCACCTTACTATATGAGTATTCTGCCTAAATGTGGTGTACGGATACATTTAGGCAGAGCACTCGTACAGTAAGGTGAGAATCAGGAAA
----------------------ATATGAGTATTCTGCCTAAATGT 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGTAC 	1
----------------------------------------------------------ATTTAGGCAGAGCACTCGT 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAGT 	5
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACAG 	11
-----------------------------------------------------------TTTAGGCAGAGCACTCGTACA 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTAC 	1
-----------------------------------------------------------TTTAGGCAGAGCACTCGTA 	2
------------------------------------------------------------TTAGGCAGAGCACTCGTACAG 	3
------------------------------------------------------------TTAGGCAGAGCACTCGTACA 	1

Overlaps with: MNEST032452
Overlaps with miRBase pre-miRNAs: mmu-mir-1948
HuntMi prediction: true miRNA