miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTTAGGTCGAGCTTCATTGGA

selected species: Arabidopsis thaliana



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 TTTAGGTCGAGCTTCATTGGA CTGTGAAGCTCGATCTAAAAG up 1 0


Secondary structure

CGAATGCCCAACAACTTCGCGTTATTTCTGAAAACTTCATATCTATTTTCTTTTAGGTCGAGCTTCATTGGAACCAAATGGTGGCTCATCCATCTATTACTAAAGCTATACAGCAGGTGGACAAGCCATCATCATGTTCCTGTGAAGCTCGATCTAAAAGACTACAGATTTGAGATTTTCAAAAATAACATGAAGTACATTCTCCACA
---------------------------------------------------TTTAGGTCGAGCTTCATTGGA 	25
----------------------------------------------------TTAGGTCGAGCTTCATTGGAA 	6
-------------------------------------------------------------------------------------------------------AGCTATACAGCAGGTGGACAA 	1
----------------------------------------------------------------------------------------------------------------------------------------TTCCTGTGAAGCTCGATCTAA 	1

Overlaps with: MNEST040167 MNEST047072
Overlaps with miRBase pre-miRNAs: ath-MIR843
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM366870 TTTAGGTCGAGCTTCATTGGA CTGTGAAGCTCGATCTAAAAG up 1 0


Secondary structure

CGAATGCCCAACAACTTCGCGTTATTTCTGAAAACTTCATATCTATTTTCTTTTAGGTCGAGCTTCATTGGAACCAAATGGTGGCTCATCCATCTATTACTAAAGCTATACAGCAGGTGGACAAGCCATCATCATGTTCCTGTGAAGCTCGATCTAAAAGACTACAGATTTGAGATTTTCAAAAATAACATGAAGTACATTCTCCACA
---------------------------------------------------TTTAGGTCGAGCTTCATTGGA 	16
----------------------------------------------------TTAGGTCGAGCTTCATTGGAA 	7
---------------------------------------------------------------------------------------------------------------------------------------GTTCCTGTGAAGCTCGATCTA 	1
--------------------------------------------------------------------------------------------------------------------------------------------TGTGAAGCTCGATCTAAAAG 	1

Overlaps with: MNEST040167 MNEST047072
Overlaps with miRBase pre-miRNAs: ath-MIR843
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM366869 TTTAGGTCGAGCTTCATTGGA CTGTGAAGCTCGATCTAAAAG up 1 0


Secondary structure

CGAATGCCCAACAACTTCGCGTTATTTCTGAAAACTTCATATCTATTTTCTTTTAGGTCGAGCTTCATTGGAACCAAATGGTGGCTCATCCATCTATTACTAAAGCTATACAGCAGGTGGACAAGCCATCATCATGTTCCTGTGAAGCTCGATCTAAAAGACTACAGATTTGAGATTTTCAAAAATAACATGAAGTACATTCTCCACA
---------------------------------------------------TTTAGGTCGAGCTTCATTGGA 	6
----------------------------------------------------TTAGGTCGAGCTTCATTGGAA 	5

Overlaps with: MNEST040167 MNEST047072
Overlaps with miRBase pre-miRNAs: ath-MIR843
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM366866 TTTAGGTCGAGCTTCATTGGA CTGTGAAGCTCGATCTAAAAG up 1 0


Secondary structure

CGAATGCCCAACAACTTCGCGTTATTTCTGAAAACTTCATATCTATTTTCTTTTAGGTCGAGCTTCATTGGAACCAAATGGTGGCTCATCCATCTATTACTAAAGCTATACAGCAGGTGGACAAGCCATCATCATGTTCCTGTGAAGCTCGATCTAAAAGACTACAGATTTGAGATTTTCAAAAATAACATGAAGTACATTCTCCACA
---------------------------------------------------TTTAGGTCGAGCTTCATTGGA 	100
---------------------------------------------------TTTAGGTCGAGCTTCATTGGAA 	3
----------------------------------------------------TTAGGTCGAGCTTCATTGGAAC 	6
----------------------------------------------------TTAGGTCGAGCTTCATTGGAA 	34
-----------------------------------------------------TAGGTCGAGCTTCATTGGAAC 	4

Overlaps with: MNEST040167 MNEST047072
Overlaps with miRBase pre-miRNAs: ath-MIR843
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM518432-13544 TTTAGGTCGAGCTTCATTGGA CTGTGAAGCTCGATCTAAAAG up 1 0


Secondary structure

CGAATGCCCAACAACTTCGCGTTATTTCTGAAAACTTCATATCTATTTTCTTTTAGGTCGAGCTTCATTGGAACCAAATGGTGGCTCATCCATCTATTACTAAAGCTATACAGCAGGTGGACAAGCCATCATCATGTTCCTGTGAAGCTCGATCTAAAAGACTACAGATTTGAGATTTTCAAAAATAACATGAAGTACATTCTCCACA
--------------------------------------------------TTTTAGGTCGAGCTTCATTGG 	1
--------------------------------------------------TTTTAGGTCGAGCTTCATTGGAAC 	2
---------------------------------------------------TTTAGGTCGAGCTTCATTGG 	2
---------------------------------------------------TTTAGGTCGAGCTTCATTGGA 	140
---------------------------------------------------TTTAGGTCGAGCTTCATTG 	1
---------------------------------------------------TTTAGGTCGAGCTTCATTGGAA 	1
----------------------------------------------------TTAGGTCGAGCTTCATTGGA 	1
----------------------------------------------------TTAGGTCGAGCTTCATTGGAA 	41
----------------------------------------------------TTAGGTCGAGCTTCATTGGAAC 	6
--------------------------------------------------------------------------------------------------------------------------AAGCCATCATCATGTTCCTGTGAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------TCCTGTGAAGCTCGATCTAAA 	1

Overlaps with: MNEST040167 MNEST047072
Overlaps with miRBase pre-miRNAs: ath-MIR843
HuntMi prediction: true miRNA