miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTCCAATTCCACCCATTCCTA

selected species: Solanum lycopersicum



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TTTCCAATTCCACCCATTCCTA GGGATTGGTGAGTTGGAAAGC down 1 1


Secondary structure

AGGTTCAGTTTAGCAGATCTGAAATTGGAGATGAGTTTTTCGAAAATCTATGGGGATTGGTGAGTTGGAAAGCTTTTCTTTTTCTTCTCTTGTGATTAGCTTTCCAATTCCACCCATTCCTATGGTTTTTCGGTATTCTCTCCCTTTTCGAATGCTATCGATCGATCAGGG
----------------------------------------------------------------------------------------------------TTTCCAATTCCACCCATTCCTA 	14
----------------------------------------------------------------------------------------------------TTTCCAATTCCACCCATTCCT 	1

Overlaps with: MNEST041549
Overlaps with miRBase pre-miRNAs: sly-MIR482a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304986 TTTCCAATTCCACCCATTCCTA GGGATTGGTGAGTTGGAAAGC down 1 1


Secondary structure

AGGTTCAGTTTAGCAGATCTGAAATTGGAGATGAGTTTTTCGAAAATCTATGGGGATTGGTGAGTTGGAAAGCTTTTCTTTTTCTTCTCTTGTGATTAGCTTTCCAATTCCACCCATTCCTATGGTTTTTCGGTATTCTCTCCCTTTTCGAATGCTATCGATCGATCAGGG
----------------------------------------------------------------------------------------------------TTTCCAATTCCACCCATTCCTA 	7

Overlaps with: MNEST041549
Overlaps with miRBase pre-miRNAs: sly-MIR482a
HuntMi prediction: true miRNA