miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTCCTTGGGAAGGTGGTTTC

selected species: Oryza sativa



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM571077-22529 TTTCCTTGGGAAGGTGGTTTC AGGCACCAGCCCAAGGAAACA down 3 0


Secondary structure

AGAAGAAGATGGAGGCACCAGCCCAAGGAAACACAGACATTGACACGCAATTCAAGGAGAAGATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCTGGA
-------------------------------------------------------------------------CTTTTTCCTTGGGAAGGTGGT 	5
--------------------------------------------------------------------------TTTTTCCTTGGGAAGGTGGTT 	2
--------------------------------------------------------------------------TTTTTCCTTGGGAAGGTGGT 	1
----------------------------------------------------------------------------TTTCCTTGGGAAGGTGGTTTC 	6
----------------------------------------------------------------------------TTTCCTTGGGAAGGTGGTT 	1
-----------------------------------------------------------------------------TTCCTTGGGAAGGTGGTTTC 	2

Overlaps with: MNEST042315 MNEST049191
Overlaps with miRBase pre-miRNAs: osa-MIR2055
HuntMi prediction: true miRNA