miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTCTATCTTCTCTTCCAATC

selected species: Physcomitrella patens



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TTTCTATCTTCTCTTCCAATC TTGGAAGAGCAGATCGAAAAA up 2 0


Secondary structure

ATACTGAAGTGGAAGAGCATCTTTCTATCTTCTCTTCCAATCTATTGATCTGCTCTTCCAATACTATCAGATCAATAGATTGGAAGAGCAGATCGAAAAATGCTCTCACCTTAAGGAG
----------------GCATCTTTCTATCTTCTCTTC 	1
---------------------TTTCTATCTTCTCTTCCAATC 	78
----------------------TTCTATCTTCTCTTCCAATCT 	8
----------------------TTCTATCTTCTCTTCCAATC 	3
-----------------------TCTATCTTCTCTTCCAATCTA 	55
-----------------------TCTATCTTCTCTTCCAATCT 	2
-----------------------TCTATCTTCTCTTCCAATC 	1
-----------------------TCTATCTTCTCTTCCAATCTATT 	1
-----------------------TCTATCTTCTCTTCCAATCTAT 	2
------------------------CTATCTTCTCTTCCAATCTAT 	2
---------------------------TCTTCTCTTCCAATCTATTGA 	1
-----------------------------TTCTCTTCCAATCTATTGATC 	1
--------------------------------TCTTCCAATCTATTGATCTGC 	3
--------------------------------------------------------------------AGATCAATAGATTGGAAGAGC 	1
------------------------------------------------------------------------------ATTGGAAGAGCAGATCGAAAA 	1
-------------------------------------------------------------------------------TTGGAAGAGCAGATCGAAAAAT 	2
-------------------------------------------------------------------------------TTGGAAGAGCAGATCGAAAA 	1
-------------------------------------------------------------------------------TTGGAAGAGCAGATCGAAAAA 	36
-------------------------------------------------------------------------------TTGGAAGAGCAGATCGAAA 	1
------------------------------------------------------------------------------------AGAGCAGATCGAAAAATGCTC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TTTCTATCTTCTCTTCCAATC TTGGAAGAGCAGATCGAAAAA up 2 0


Secondary structure

ATACTTAAGTCGAAGAGCATCTTTCTATCTTCTCTTCCAATCTATTGATCTGCCCTTCCAATACTATCAGATCAATAGATTGGAAGAGCAGATCGAAAAATGCTCTCACCTTAAGGAG
----------------GCATCTTTCTATCTTCTCTTC 	1
---------------------TTTCTATCTTCTCTTCCAATC 	78
----------------------TTCTATCTTCTCTTCCAATCT 	8
----------------------TTCTATCTTCTCTTCCAATC 	3
-----------------------TCTATCTTCTCTTCCAATCTA 	55
-----------------------TCTATCTTCTCTTCCAATCT 	2
-----------------------TCTATCTTCTCTTCCAATC 	1
-----------------------TCTATCTTCTCTTCCAATCTATT 	1
-----------------------TCTATCTTCTCTTCCAATCTAT 	2
------------------------CTATCTTCTCTTCCAATCTAT 	2
---------------------------TCTTCTCTTCCAATCTATTGA 	1
-----------------------------TTCTCTTCCAATCTATTGATC 	1
--------------------------------TCTTCCAATCTATTGATCTGC 	3
--------------------------------------------------------------------AGATCAATAGATTGGAAGAGC 	1
------------------------------------------------------------------------------ATTGGAAGAGCAGATCGAAAA 	1
-------------------------------------------------------------------------------TTGGAAGAGCAGATCGAAAAAT 	2
-------------------------------------------------------------------------------TTGGAAGAGCAGATCGAAAA 	1
-------------------------------------------------------------------------------TTGGAAGAGCAGATCGAAAAA 	36
-------------------------------------------------------------------------------TTGGAAGAGCAGATCGAAA 	1
------------------------------------------------------------------------------------AGAGCAGATCGAAAAATGCTC 	1


Overlaps with: MNEST039586 MNEST039587 MNEST051455 MNEST051456
Overlaps with miRBase pre-miRNAs: ppt-MIR1027a ppt-MIR1027b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 TTTCTATCTTCTCTTCCAATC TTGGAAGAGCAGATCGAAAAA up 2 0


Secondary structure

CGAAGAGCATCTTTCTATCTTCTCTTCCAATCTATTGATCTGCCCTTCCAATACTATCAGATCAATAGATTGGAAGAGCAGATCGAAAAATGCTCTCA
------GCATCTTTCTATCTTCTCTTC 	1
-----------TTTCTATCTTCTCTTCCAATC 	78
------------TTCTATCTTCTCTTCCAATCT 	8
------------TTCTATCTTCTCTTCCAATC 	3
-------------TCTATCTTCTCTTCCAATCTA 	55
-------------TCTATCTTCTCTTCCAATCT 	2
-------------TCTATCTTCTCTTCCAATC 	1
-------------TCTATCTTCTCTTCCAATCTATT 	1
-------------TCTATCTTCTCTTCCAATCTAT 	2
--------------CTATCTTCTCTTCCAATCTAT 	2
-----------------TCTTCTCTTCCAATCTATTGA 	1
-------------------TTCTCTTCCAATCTATTGATC 	1
----------------------TCTTCCAATCTATTGATCTGC 	3
----------------------------------------------------------AGATCAATAGATTGGAAGAGC 	1
--------------------------------------------------------------------ATTGGAAGAGCAGATCGAAAA 	1
---------------------------------------------------------------------TTGGAAGAGCAGATCGAAAAAT 	2
---------------------------------------------------------------------TTGGAAGAGCAGATCGAAAA 	1
---------------------------------------------------------------------TTGGAAGAGCAGATCGAAAAA 	36
---------------------------------------------------------------------TTGGAAGAGCAGATCGAAA 	1
--------------------------------------------------------------------------AGAGCAGATCGAAAAATGCTC 	1


Overlaps with: MNEST039586 MNEST039587 MNEST051455 MNEST051456
Overlaps with miRBase pre-miRNAs: ppt-MIR1027a ppt-MIR1027b
HuntMi prediction: true miRNA