miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTGAACCATCACTCGACTCCT

selected species: Mus musculus



21 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
---------------------AAGCTCGACTCATGGTTTGAACCA 	1
---------------------AAGCTCGACTCATGGTTTG 	1
----------------------AGCTCGACTCATGGTTTGAACCATT 	1
----------------------AGCTCGACTCATGGTTTGAAC 	454
----------------------AGCTCGACTCATGGTTTGAACCA 	285
----------------------AGCTCGACTCATGGTTTGAACC 	2119
----------------------AGCTCGACTCATGGTTTGAA 	16
----------------------AGCTCGACTCATGGTTTGAACCAT 	15
----------------------AGCTCGACTCATGGTTTGA 	172
-----------------------GCTCGACTCATGGTTTGAACC 	4575
-----------------------GCTCGACTCATGGTTTGAACCAT 	21
-----------------------GCTCGACTCATGGTTTGAAC 	1292
-----------------------GCTCGACTCATGGTTTGAA 	12
-----------------------GCTCGACTCATGGTTTGAACCA 	769
-----------------------GCTCGACTCATGGTTTGAACCATT 	32
------------------------CTCGACTCATGGTTTGAACCA 	1
------------------------CTCGACTCATGGTTTGAAC 	1
------------------------CTCGACTCATGGTTTGAACC 	2
-------------------------TCGACTCATGGTTTGAACC 	24
-------------------------TCGACTCATGGTTTGAACCA 	3
-------------------------TCGACTCATGGTTTGAACCATT 	2
-----------------------------------------------------TTCGTGGTTTGAACCATCACTCGACT 	1
-----------------------------------------------------------GTTTGAACCATCACTCGACT 	35
-----------------------------------------------------------GTTTGAACCATCACTCGAC 	3
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	449
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	86
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	36
------------------------------------------------------------TTTGAACCATCACTCGACTC 	923
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	12564
------------------------------------------------------------TTTGAACCATCACTCGACT 	377
------------------------------------------------------------TTTGAACCATCACTCGACTCCTG 	4
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	15484
-------------------------------------------------------------TTGAACCATCACTCGACTCC 	4
-------------------------------------------------------------TTGAACCATCACTCGACTCCT 	16
--------------------------------------------------------------TGAACCATCACTCGACTCC 	12
--------------------------------------------------------------TGAACCATCACTCGACTCCT 	9


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
----------------------AGCTCGACTCATGGTTTGAACCATT 	1
----------------------AGCTCGACTCATGGTTTGAAC 	184
----------------------AGCTCGACTCATGGTTTGAACCA 	98
----------------------AGCTCGACTCATGGTTTGAACC 	834
----------------------AGCTCGACTCATGGTTTGA 	74
----------------------AGCTCGACTCATGGTTTGAA 	1
----------------------AGCTCGACTCATGGTTTGAACCAT 	5
-----------------------GCTCGACTCATGGTTTGAA 	4
-----------------------GCTCGACTCATGGTTTGAACC 	1780
-----------------------GCTCGACTCATGGTTTGAAC 	518
-----------------------GCTCGACTCATGGTTTGAACCAT 	6
-----------------------GCTCGACTCATGGTTTGAACCA 	216
-----------------------GCTCGACTCATGGTTTGAACCATT 	6
------------------------CTCGACTCATGGTTTGAACCA 	1
------------------------CTCGACTCATGGTTTGAAC 	1
------------------------CTCGACTCATGGTTTGAACC 	1
-------------------------TCGACTCATGGTTTGAACC 	8
-------------------------TCGACTCATGGTTTGAACCA 	1
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	31
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	19
-----------------------------------------------------------GTTTGAACCATCACTCGACT 	6
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	159
------------------------------------------------------------TTTGAACCATCACTCGACTC 	434
------------------------------------------------------------TTTGAACCATCACTCGACT 	150
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	4832
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	6691
-------------------------------------------------------------TTGAACCATCACTCGACTCC 	3
-------------------------------------------------------------TTGAACCATCACTCGACTCCT 	8
--------------------------------------------------------------TGAACCATCACTCGACTCC 	1
--------------------------------------------------------------TGAACCATCACTCGACTCCT 	5
---------------------------------------------------------------GAACCATCACTCGACTCCT 	1


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539868 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	7


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539877-5198 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
-----------------------GCTCGACTCATGGTTTGAACCA 	1
-----------------------GCTCGACTCATGGTTTGAACC 	2
-----------------------GCTCGACTCATGGTTTGAAC 	1
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	1
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	22
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	19
------------------------------------------------------------TTTGAACCATCACTCGACT 	1
------------------------------------------------------------TTTGAACCATCACTCGACTC 	2


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539835 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	48
------------------------------------------------------------TTTGAACCATCACTCGACT 	1
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	10


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539855 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
----------------------AGCTCGACTCATGGTTTGAAC 	1
----------------------AGCTCGACTCATGGTTTGAACCA 	1
----------------------AGCTCGACTCATGGTTTGAACC 	1
-----------------------GCTCGACTCATGGTTTGAACCA 	3
-----------------------GCTCGACTCATGGTTTGAACC 	6
-----------------------GCTCGACTCATGGTTTGAAC 	2
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	1
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	103
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	44
------------------------------------------------------------TTTGAACCATCACTCGACTC 	10
------------------------------------------------------------TTTGAACCATCACTCGACT 	5
------------------------------------------------------------TTTGAACCATCACTCGACTCCTG 	2


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM527276 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
--CGACTCTGGGTTTGAACCAA 	2
----------------------AGCTCGACTCATGGTTTGAACCATT 	2
----------------------AGCTCGACTCATGGTTTGAAC 	471
----------------------AGCTCGACTCATGGTTTGAACC 	1877
----------------------AGCTCGACTCATGGTTTGAACCA 	291
----------------------AGCTCGACTCATGGTTTGA 	136
----------------------AGCTCGACTCATGGTTTGAA 	9
----------------------AGCTCGACTCATGGTTTGAACCAT 	17
-----------------------GCTCGACTCATGGTTTGAA 	16
-----------------------GCTCGACTCATGGTTTGAACC 	4737
-----------------------GCTCGACTCATGGTTTGAAC 	1344
-----------------------GCTCGACTCATGGTTTGAACCAT 	12
-----------------------GCTCGACTCATGGTTTGAACCA 	743
-----------------------GCTCGACTCATGGTTTGAACCATT 	14
------------------------CTCGACTCATGGTTTGAACC 	6
-------------------------TCGACTCATGGTTTGAACC 	10
-------------------------TCGACTCATGGTTTGAACCATT 	1
-------------------------TCGACTCATGGTTTGAACCA 	6
---------------------------GACTCATGGTTTGAACCATT 	1
---------------------------GACTCATGGTTTGAACCAT 	1
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	53
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	18
-----------------------------------------------------------GTTTGAACCATCACTCGACT 	26
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	309
-----------------------------------------------------------GTTTGAACCATCACTCGAC 	3
------------------------------------------------------------TTTGAACCATCACTCGACTC 	785
------------------------------------------------------------TTTGAACCATCACTCGACT 	249
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	9538
------------------------------------------------------------TTTGAACCATCACTCGACTCCTG 	4
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	13473
-------------------------------------------------------------TTGAACCATCACTCGACTCCT 	11
--------------------------------------------------------------TGAACCATCACTCGACTCC 	7
--------------------------------------------------------------TGAACCATCACTCGACTCCT 	14


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539869 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
--CGACTCTGGGTTTGAACCAAA 	1
----------------------AGCTCGACTCATGGTTTGAACCAT 	4
----------------------AGCTCGACTCATGGTTTGAACCA 	28
----------------------AGCTCGACTCATGGTTTGAACC 	39
----------------------AGCTCGACTCATGGTTTGAAC 	20
----------------------AGCTCGACTCATGGTTTGAA 	2
----------------------AGCTCGACTCATGGTTTGA 	1
-----------------------GCTCGACTCATGGTTTGAACCATT 	1
-----------------------GCTCGACTCATGGTTTGAACCA 	77
-----------------------GCTCGACTCATGGTTTGAACCAT 	11
-----------------------GCTCGACTCATGGTTTGAACC 	56
-----------------------GCTCGACTCATGGTTTGAAC 	34
-----------------------GCTCGACTCATGGTTTGAA 	5
-------------------------TCGACTCATGGTTTGAACCA 	1
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	30
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	145
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	10
-----------------------------------------------------------GTTTGAACCATCACTCGACT 	3
-----------------------------------------------------------GTTTGAACCATCACTCGAC 	2
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	9404
------------------------------------------------------------TTTGAACCATCACTCGACTC 	56
------------------------------------------------------------TTTGAACCATCACTCGACT 	30
------------------------------------------------------------TTTGAACCATCACTCGACTCCTG 	8
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	1751
-------------------------------------------------------------TTGAACCATCACTCGACTCCT 	12


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Mus musculus GSM539870 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
-----------------------GCTCGACTCATGGTTTGAACCA 	1
-----------------------GCTCGACTCATGGTTTGAA 	1
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	13
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	4


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Mus musculus GSM539849 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	5


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Mus musculus GSM527277-2110 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
---------------------AAGCTCGACTCATGGTTTGAACC 	3
---------------------AAGCTCGACTCATGGTTTG 	1
---------------------AAGCTCGACTCATGGTTTGAAC 	1
----------------------AGCTCGACTCATGGTTTGAACCATT 	2
----------------------AGCTCGACTCATGGTTTGAACCAT 	49
----------------------AGCTCGACTCATGGTTTGAAC 	749
----------------------AGCTCGACTCATGGTTTGAACCA 	430
----------------------AGCTCGACTCATGGTTTGAACC 	3078
----------------------AGCTCGACTCATGGTTTGAA 	12
----------------------AGCTCGACTCATGGTTTGA 	307
-----------------------GCTCGACTCATGGTTTGAACCAT 	41
-----------------------GCTCGACTCATGGTTTGAA 	25
-----------------------GCTCGACTCATGGTTTGAACCATT 	21
-----------------------GCTCGACTCATGGTTTGAACC 	8668
-----------------------GCTCGACTCATGGTTTGAAC 	2597
-----------------------GCTCGACTCATGGTTTGAACCA 	1138
------------------------CTCGACTCATGGTTTGAACCA 	1
------------------------CTCGACTCATGGTTTGAACC 	6
-------------------------TCGACTCATGGTTTGAACC 	21
-------------------------TCGACTCATGGTTTGAACCA 	3
---------------------------GACTCATGGTTTGAACCATT 	1
-----------------------------------------------------------GTTTGAACCATCACTCGAC 	9
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	177
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	46
-----------------------------------------------------------GTTTGAACCATCACTCGACT 	47
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	775
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	10963
------------------------------------------------------------TTTGAACCATCACTCGACTCCTG 	4
------------------------------------------------------------TTTGAACCATCACTCGACTC 	1096
------------------------------------------------------------TTTGAACCATCACTCGACT 	396
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	15172
-------------------------------------------------------------TTGAACCATCACTCGACTCCT 	13
-------------------------------------------------------------TTGAACCATCACTCGACTCC 	2
--------------------------------------------------------------TGAACCATCACTCGACTCCT 	4
--------------------------------------------------------------TGAACCATCACTCGACTCC 	2
---------------------------------------------------------------GAACCATCACTCGACTCCT 	2


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Mus musculus GSM539848 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
-----------------------GCTCGACTCATGGTTTGAAC 	1
-----------------------GCTCGACTCATGGTTTGAACCA 	1
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	2
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	16
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	1


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Mus musculus GSM539864 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	1
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	9


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Mus musculus GSM539872 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	12
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	5
------------------------------------------------------------TTTGAACCATCACTCGACTC 	3


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Mus musculus GSM539878 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
----------------------AGCTCGACTCATGGTTTGAACC 	1
----------------------AGCTCGACTCATGGTTTGAA 	1
-----------------------GCTCGACTCATGGTTTGAAC 	1
-----------------------GCTCGACTCATGGTTTGAA 	1
-----------------------GCTCGACTCATGGTTTGAACCAT 	1
-----------------------GCTCGACTCATGGTTTGAACCA 	2
-----------------------GCTCGACTCATGGTTTGAACC 	2
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	2
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	3
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	1
-----------------------------------------------------------GTTTGAACCATCACTCGAC 	1
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	153
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	73
------------------------------------------------------------TTTGAACCATCACTCGACT 	4
------------------------------------------------------------TTTGAACCATCACTCGACTC 	18


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Mus musculus GSM539873 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
----------------------AGCTCGACTCATGGTTTGAACC 	2
----------------------AGCTCGACTCATGGTTTGAA 	1
-----------------------GCTCGACTCATGGTTTGAAC 	2
-----------------------GCTCGACTCATGGTTTGAACCA 	8
-----------------------GCTCGACTCATGGTTTGAACC 	1
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	1
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	1
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	106
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	34
------------------------------------------------------------TTTGAACCATCACTCGACT 	1
------------------------------------------------------------TTTGAACCATCACTCGACTC 	12


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Mus musculus GSM539875 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
----------------------AGCTCGACTCATGGTTTGAACCA 	1
----------------------AGCTCGACTCATGGTTTGAACC 	2
----------------------AGCTCGACTCATGGTTTGAA 	3
----------------------AGCTCGACTCATGGTTTGA 	11
-----------------------GCTCGACTCATGGTTTGAACCA 	4
-----------------------GCTCGACTCATGGTTTGAACC 	6
-----------------------GCTCGACTCATGGTTTGAAC 	4
-----------------------GCTCGACTCATGGTTTGAA 	27
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	3
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	31
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	8
-----------------------------------------------------------GTTTGAACCATCACTCGACT 	10
-----------------------------------------------------------GTTTGAACCATCACTCGAC 	5
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	1160
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	755
------------------------------------------------------------TTTGAACCATCACTCGACTC 	294
------------------------------------------------------------TTTGAACCATCACTCGACT 	121
------------------------------------------------------------TTTGAACCATCACTCGACTCCTG 	2
-------------------------------------------------------------TTGAACCATCACTCGACTCCT 	1


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Mus musculus GSM539867 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
----------------------AGCTCGACTCATGGTTTGA 	1
----------------------AGCTCGACTCATGGTTTGAACCA 	13
----------------------AGCTCGACTCATGGTTTGAACC 	26
----------------------AGCTCGACTCATGGTTTGAAC 	2
-----------------------GCTCGACTCATGGTTTGAACCA 	85
-----------------------GCTCGACTCATGGTTTGAAC 	20
-----------------------GCTCGACTCATGGTTTGAA 	4
-----------------------GCTCGACTCATGGTTTGAACCAT 	8
-----------------------GCTCGACTCATGGTTTGAACC 	68
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	54
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	7
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	7
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	844
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	476
------------------------------------------------------------TTTGAACCATCACTCGACTC 	36
------------------------------------------------------------TTTGAACCATCACTCGACT 	3
---------------------------------------------------------------GAACCATCACTCGACTCCT 	1


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Mus musculus GSM539854 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
--------------------AAAGCTCGACTCATGGTTTGAACCA 	1
----------------------AGCTCGACTCATGGTTTGAACC 	4
----------------------AGCTCGACTCATGGTTTGAACCAT 	1
----------------------AGCTCGACTCATGGTTTGAACCA 	6
----------------------AGCTCGACTCATGGTTTGAA 	1
-----------------------GCTCGACTCATGGTTTGAACCA 	12
-----------------------GCTCGACTCATGGTTTGAAC 	4
-----------------------GCTCGACTCATGGTTTGAACC 	18
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	3
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	22
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	9
-----------------------------------------------------------GTTTGAACCATCACTCGAC 	1
------------------------------------------------------------TTTGAACCATCACTCGACTCCTG 	2
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	1019
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	487
------------------------------------------------------------TTTGAACCATCACTCGACTC 	37
------------------------------------------------------------TTTGAACCATCACTCGACT 	5
-------------------------------------------------------------TTGAACCATCACTCGACTCCT 	1


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Mus musculus GSM527279-2112 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
---------------------AAGCTCGACTCATGGTTTGAACC 	1
---------------------AAGCTCGACTCATGGTTTGAAC 	1
---------------------AAGCTCGACTCATGGTTTGA 	1
----------------------AGCTCGACTCATGGTTTGAACCATT 	3
----------------------AGCTCGACTCATGGTTTGAAC 	702
----------------------AGCTCGACTCATGGTTTGAACCA 	422
----------------------AGCTCGACTCATGGTTTGAACC 	3878
----------------------AGCTCGACTCATGGTTTGAA 	17
----------------------AGCTCGACTCATGGTTTGAACCAT 	31
----------------------AGCTCGACTCATGGTTTGA 	268
-----------------------GCTCGACTCATGGTTTGAACC 	8862
-----------------------GCTCGACTCATGGTTTGAACCAT 	25
-----------------------GCTCGACTCATGGTTTGAAC 	2142
-----------------------GCTCGACTCATGGTTTGAA 	43
-----------------------GCTCGACTCATGGTTTGAACCA 	1233
-----------------------GCTCGACTCATGGTTTGAACCATT 	25
------------------------CTCGACTCATGGTTTGAACCA 	1
------------------------CTCGACTCATGGTTTGAAC 	1
------------------------CTCGACTCATGGTTTGAACC 	7
-------------------------TCGACTCATGGTTTGAACC 	22
-------------------------TCGACTCATGGTTTGAACCA 	5
-------------------------TCGACTCATGGTTTGAACCATT 	1
-----------------------------------------------------------GTTTGAACCATCACTCGACT 	44
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	842
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	92
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	61
------------------------------------------------------------TTTGAACCATCACTCGACTC 	1397
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	18987
------------------------------------------------------------TTTGAACCATCACTCGACT 	533
------------------------------------------------------------TTTGAACCATCACTCGACTCCTGG 	1
------------------------------------------------------------TTTGAACCATCACTCGACTCCTG 	6
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	27606
-------------------------------------------------------------TTGAACCATCACTCGACTCC 	10
-------------------------------------------------------------TTGAACCATCACTCGACTCCT 	11
--------------------------------------------------------------TGAACCATCACTCGACTCC 	9
--------------------------------------------------------------TGAACCATCACTCGACTCCT 	14


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Mus musculus GSM539874 TTTGAACCATCACTCGACTCCT AGCTCGACTCATGGTTTGAACC down 5 1


Secondary structure

CTCGACTCTGGGTTTGAACCAAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCTGGTTCGAACCATCATCACT
----------------------AGCTCGACTCATGGTTTGAACCA 	2
----------------------AGCTCGACTCATGGTTTGAAC 	1
----------------------AGCTCGACTCATGGTTTGAA 	7
----------------------AGCTCGACTCATGGTTTGA 	13
-----------------------GCTCGACTCATGGTTTGAACCA 	10
-----------------------GCTCGACTCATGGTTTGAA 	33
-----------------------GCTCGACTCATGGTTTGAACCAT 	1
-----------------------GCTCGACTCATGGTTTGAACC 	12
-----------------------GCTCGACTCATGGTTTGAAC 	5
-------------------------TCGACTCATGGTTTGAACCA 	1
-----------------------------------------------------------GTTTGAACCATCACTCGACTCC 	48
-----------------------------------------------------------GTTTGAACCATCACTCGACTCCT 	4
-----------------------------------------------------------GTTTGAACCATCACTCGACTC 	19
-----------------------------------------------------------GTTTGAACCATCACTCGACT 	6
-----------------------------------------------------------GTTTGAACCATCACTCGAC 	6
------------------------------------------------------------TTTGAACCATCACTCGACTCCT 	1513
------------------------------------------------------------TTTGAACCATCACTCGACTCC 	943
------------------------------------------------------------TTTGAACCATCACTCGACTC 	389
------------------------------------------------------------TTTGAACCATCACTCGACT 	133
------------------------------------------------------------TTTGAACCATCACTCGACTCCTG 	3
-------------------------------------------------------------TTGAACCATCACTCGACTCCT 	1


Overlaps with: MNEST032073 MNEST032074
Overlaps with miRBase pre-miRNAs: mmu-mir-434
HuntMi prediction: true miRNA