miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTGAGAAGGTATCATGAGAT

selected species: Oryza sativa



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM520639-18678 TTTGAGAAGGTATCATGAGAT CTTGTGATACCTCCTCAAGGA up 2 0


Secondary structure

TAGATCTGCATTTTAGAGTAATTCTACGGTCTTTGAGAAGGTATCATGAGATACAAAAAATTTAGTGTAAAATTTAGTATCTTATGATACCTCATAGTACCTAGGTACCATAAGATACTAAATTTACAATAGAAAAAATGGTACCTTGTGATACCTCCTCAAGGAACGTAAAATTGCTCTGCATTTTATAATT
---------ATTTTAGAGTAATTCTACGGT 	1
-------------------------------TTTGAGAAGGTATCATGAGAT 	25
-------------------------------TTTGAGAAGGTATCATGAGATA 	8
-------------------------------TTTGAGAAGGTATCATGAGA 	6
---------------------------------TGAGAAGGTATCATGAGATAC 	2
-----------------------------------------------------------------------------------ATGATACCTCATAGTACCTAGGT 	3
----------------------------------------------------------------------------------------------------------------------TAAATTTACAATAGAAAAAATGGT 	1
-----------------------------------------------------------------------------------------------------------------------AAATTTACAATAGAAAAAATGGTA 	5
------------------------------------------------------------------------------------------------------------------------AATTTACAATAGAAAAAATGGTA 	5
------------------------------------------------------------------------------------------------------------------------AATTTACAATAGAAAAAATGGTAC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------TGATACCTCCTCAAGGAACGT 	6
----------------------------------------------------------------------------------------------------------------------------------------------------TGATACCTCCTCAAGGAACGTA 	3

Overlaps with: MNEST004738
Overlaps with miRBase pre-miRNAs: osa-MIR5542
HuntMi prediction: true miRNA