miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTTGATCACCAGTAACTGAGAT

selected species: Drosophila melanogaster



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM466487_wt_total TTTGATCACCAGTAACTGAGAT TTCGTTTTCTGGCAATCAAAAG up 4 0


Secondary structure

GTTATCAAGGGCCGAGTTACCTTTGATCACCAGTAACTGAGATTGTTTCTGATACGGTTTCGTTTTCTGGCAATCAAAAGAACTTGGACTCGACTTGA
---------------------TTTGATCACCAGTAACTGAGAT 	5
----------------------------------------------------------TTCGTTTTCTGGCAATCAAAAG 	1
----------------------------------------------------------TTCGTTTTCTGGCAATCAA 	1

Overlaps with: MNEST036497 MNEST036498
Overlaps with miRBase pre-miRNAs: dme-mir-961
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM466494_r2d2_heterozygotes_untreated TTTGATCACCAGTAACTGAGAT TTCGTTTTCTGGCAATCAAAAG up 4 0


Secondary structure

GTTATCAAGGGCCGAGTTACCTTTGATCACCAGTAACTGAGATTGTTTCTGATACGGTTTCGTTTTCTGGCAATCAAAAGAACTTGGACTCGACTTGA
---------------------TTTGATCACCAGTAACTGAGAT 	5
----------------------------------------------------------TTCGTTTTCTGGCAATCAAAAG 	1

Overlaps with: MNEST036497 MNEST036498
Overlaps with miRBase pre-miRNAs: dme-mir-961
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated TTTGATCACCAGTAACTGAGAT TTCGTTTTCTGGCAATCAAAAG up 4 0


Secondary structure

GTTATCAAGGGCCGAGTTACCTTTGATCACCAGTAACTGAGATTGTTTCTGATACGGTTTCGTTTTCTGGCAATCAAAAGAACTTGGACTCGACTTGA
---------------------TTTGATCACCAGTAACTGAGAT 	6
---------------------TTTGATCACCAGTAACTGAGA 	3
----------------------TTGATCACCAGTAACTGAGAT 	1
----------------------------------------------------------TTCGTTTTCTGGCAATCAAAAG 	1
----------------------------------------------------------TTCGTTTTCTGGCAATCAAA 	1

Overlaps with: MNEST036497 MNEST036498
Overlaps with miRBase pre-miRNAs: dme-mir-961
HuntMi prediction: true miRNA