miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTTGCGAGTTGGCCCGCTTGC

selected species: Oryza sativa

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM571078-22531	TTTGCGAGTTGGCCCGCTTGC	AAGCGGGTCAACCCGTGAACC	down	1	0

Secondary structure

GAAAGGAAAGACTTAGGGTTGCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGATCGACCCACTTGCATCTCTAAGTGCGGCAAATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCGCTTGCATCCCTAGATGCCGTCTTA
--------------------------------------------------AGGCAAAATTAGTAGGTAACCCGT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGTAGGTTTGCGAGTTGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCGAGTTGGCCCGCTTGC 	12
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGAGTTGGCCCGCTTGC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGAGTTGGCCCGCTTGCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGAGTTGGCCCGCTTGCA 	1

Overlaps with: MNEST042215 MNEST049116
Overlaps with miRBase pre-miRNAs: osa-MIR1431
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM520638-18676	TTTGCGAGTTGGCCCGCTTGC	AAGCGGGTCAACCCGTGAACC	down	1	0

Secondary structure

GAAAGGAAAGACTTAGGGTTGCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGATCGACCCACTTGCATCTCTAAGTGCGGCAAATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCGCTTGCATCCCTAGATGCCGTCTTA
-------------------------------------TGAACCCGCTTATAGGCAAAA 	1
----------------------------------------------TTATAGGCAAAATTAGTAGGT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACATATAAGTAGGTTTGCGAG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGTAGGTTTGCGAGTTG 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGTAGGTTTGCGAGTTGG 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTAGGTTTGCGAGTTGGC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCGAGTTGGCCCGCTTG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCGAGTTGGCCCGCTTGC 	24

Overlaps with: MNEST042215 MNEST049116
Overlaps with miRBase pre-miRNAs: osa-MIR1431
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM520640-18679	TTTGCGAGTTGGCCCGCTTGC	AAGCGGGTCAACCCGTGAACC	down	1	0

Secondary structure

GAAAGGAAAGACTTAGGGTTGCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGATCGACCCACTTGCATCTCTAAGTGCGGCAAATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCGCTTGCATCCCTAGATGCCGTCTTA
-------------------------------------TGAACCCGCTTATAGGCAAAA 	1
------------------------------------------CCGCTTATAGGCAAAATTAGTAGG 	1
---------------------------------------------CTTATAGGCAAAATTAGTAGGTAA 	1
---------------------------------------------------------------------------------------------------------------AGTGCGGCAAATCGGACCACGACG 	1
---------------------------------------------------------------------------------------------------------------AGTGCGGCAAATCGGACCACGAC 	1
---------------------------------------------------------------------------------------------------------------------------CGGACCACGACGTGAAAACA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------TCACTTATTTTACATATAAGTAGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACATATAAGTAGGTTTGCG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACATATAAGTAGGTTTGC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATATAAGTAGGTTTGCG 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAGTAGGTTTGCGAGTTGGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGTAGGTTTGCGAGTT 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGTAGGTTTGCGAGTTG 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGTAGGTTTGCGAGT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGTAGGTTTGCGAGTTGG 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTAGGTTTGCGAGTTGGC 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTAGGTTTGCGAGTTGGCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCGAGTTGGCCCGCTTGC 	14

Overlaps with: MNEST042215 MNEST049116
Overlaps with miRBase pre-miRNAs: osa-MIR1431
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Oryza sativa	GSM520639-18678	TTTGCGAGTTGGCCCGCTTGC	AAGCGGGTCAACCCGTGAACC	down	1	0

Secondary structure

GAAAGGAAAGACTTAGGGTTGCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGATCGACCCACTTGCATCTCTAAGTGCGGCAAATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCGCTTGCATCCCTAGATGCCGTCTTA
--------------------------------------------------------------------------------------------------------------AAGTGCGGCAAATCGGACCACGAC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAGTAGGTTTGCGAGTTGGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGTAGGTTTGCGAGTTG 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGTAGGTTTGCGAGTTGG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTAGGTTTGCGAGTTGGC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTTGCGAGTTGGCCCGCT 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCGAGTTGGCCCGCTTGC 	9
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGAGTTGGCCCGCTTGC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGGCCCGCTTGCATCCCT 	1

Overlaps with: MNEST042215 MNEST049116
Overlaps with miRBase pre-miRNAs: osa-MIR1431
HuntMi prediction: true miRNA