miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTGGACTGAAGGGAGCTCCT

selected species: Vitis vinifera



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458930-2718 TTTGGACTGAAGGGAGCTCCT GGGTTCCTTTGCAGCCCAAAAC down 1 1


Secondary structure

CTGCAGAAATGGGGGTTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTCCTAGTTCTTCT
---------------------------------------------------------------------------TTTTGGACTGAAGGGAGCTCCT 	9
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	2103
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCC 	38
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTC 	2
-----------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCT 	127
-----------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	41
------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCTAG 	11
------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCTA 	1
------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCT 	4


Overlaps with: MNEST008295
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458929-2717 TTTGGACTGAAGGGAGCTCCT GGGTTCCTTTGCAGCCCAAAAC down 1 1


Secondary structure

CTGCAGAAATGGGGGTTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTCCTAGTTCTTCT
---------------------------------------------------------------------------TTTTGGACTGAAGGGAGCTCCT 	6
---------------------------------------------------------------------------TTTTGGACTGAAGGGAGCTCC 	2
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCTA 	1
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCCT 	3137
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTCC 	66
----------------------------------------------------------------------------TTTGGACTGAAGGGAGCTC 	5
-----------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCT 	253
-----------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	142
------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCTAG 	19
------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCT 	4


Overlaps with: MNEST008295
HuntMi prediction: true miRNA