miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTGGATTGAAGGGAGCTCTA

selected species: Glycine max



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM852280 TTTGGATTGAAGGGAGCTCTA GAGCTCCTTGAAGTCCAATTG down 3 0


Secondary structure

GGTTATGGAGTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGGATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCATTAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCTTTATAGTATTATCCTTCTTTGGATTGAAGGGAGCTCTACACCCTTCT
------------GAGCTCCTTGAAGTCCAATT 	2
------------------------------------------------------AGCTGCTTAGCTATGGATCCC 	10
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	22409
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	810
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	44
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTAC 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	64
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	64
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	32
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTAC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTACA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTA 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTA 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTACA 	2


Overlaps with miRBase pre-miRNAs: gma-MIR159e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM852280 TTTGGATTGAAGGGAGCTCTA GAGCTCCTTGAAGTCCAATTG down 3 0


Secondary structure

GGATTATGAAGTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGAATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCAATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCTTTATAGTATTAACCTTCTTTGGATTGAAGGGAGCTCTACACCCTTCTC
-------------GAGCTCCTTGAAGTCCAATT 	2
----------------------------------AGGATCTTACTGGGTGAATTG 	4
-------------------------------------------------------AGCTGCTTAGCTATGGATCCC 	10
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	22409
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	810
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	44
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTAC 	5
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	64
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	64
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	32
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTAC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTACA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTA 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTA 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTACA 	2

Overlaps with: MNEST045281 MNEST045771
Overlaps with miRBase pre-miRNAs: gma-MIR159d
HuntMi prediction: true miRNA