miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTGGATTGAAGGGAGCTCTA

selected species: Solanum lycopersicum



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TTTGGATTGAAGGGAGCTCTA GAGCTCCTTGAAGTCCAACAG down 3 0


Secondary structure

TATTTTATGTGTTATGGGAGTGGAGCTCCTTGAAGTCCAACAGAAGATCTAACAGGTTAGATTGAGCTGCTGACCTATGGATTCCTCAGCCCTATCTATTTATGATTTCAAACATATAGATAGGTTTGTGGGTTTGCATATGTCAGGAGCTTTATTTTACCCTTTGTTTGATCATTTTTTGGATTGAAGGGAGCTCTACATTCATTTCTTCTTACTA
----------------------GAGCTCCTTGAAGTCCAAC 	2
----------------------------------------------------------------AGCTGCTGACCTATGGATTCC 	1
-----------------------------------------------------------------GCTGCTGACCTATGGATTCC 	8
-----------------------------------------------------------------------------------------------------------------------------------GTTTGCATATGTCAGGAGCTT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGGATTGAAGGGAGCTCTA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	203
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	38
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	41
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304986 TTTGGATTGAAGGGAGCTCTA GAGCTCCTTGAAGTCCAACAG down 3 0


Secondary structure

TATTTTATGTGTTATGGGAGTGGAGCTCCTTGAAGTCCAACAGAAGATCTAACAGGTTAGATTGAGCTGCTGACCTATGGATTCCTCAGCCCTATCTATTTATGATTTCAAACATATAGATAGGTTTGTGGGTTTGCATATGTCAGGAGCTTTATTTTACCCTTTGTTTGATCATTTTTTGGATTGAAGGGAGCTCTACATTCATTTCTTCTTACTA
----------------------GAGCTCCTTGAAGTCCAACAG 	1
----------------------GAGCTCCTTGAAGTCCAACA 	1
----------------------GAGCTCCTTGAAGTCCAAC 	6
----------------------------------------------------------------AGCTGCTGACCTATGGATTCC 	3
-----------------------------------------------------------------GCTGCTGACCTATGGATTCC 	9
-----------------------------------------------------------------GCTGCTGACCTATGGATTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	151
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	40
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	96
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	4



HuntMi prediction: true miRNA