miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTGGATTGAAGGGAGCTCTA

selected species: Vitis vinifera



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TTTGGATTGAAGGGAGCTCTA GAGCTCCTTGAAGTCCAATAG down 3 0


Secondary structure

GGTTTTGGAGTGGAGCTCCTTGAAGTCCAATAGAGGGTCTTACTGGGTAGATTGAGCTGCTGACTTATGGATCCCACAGCCCTATCCCGTCAATGGGGGGCATTGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTGCATTATCCAAGTTTAGATCCTTGTTTGGATTGAAGGGAGCTCTACACCTCTCT
------------GAGCTCCTTGAAGTCCAATAGA 	2
------------GAGCTCCTTGAAGTCCAATAG 	5
------------GAGCTCCTTGAAGTCCAATA 	1
-----------------------------------------------------GAGCTGCTGACTTATGGATC 	1
------------------------------------------------------AGCTGCTGACTTATGGATCCC 	3
------------------------------------------------------AGCTGCTGACTTATGGATCC 	6
------------------------------------------------------AGCTGCTGACTTATGGATC 	1
--------------------------------------------------------CTGCTGACTTATGGATCCCAC 	1
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTGCA 	2
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTGC 	132
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTG 	2
-----------------------------------------------------------------------------------------------------------------------TTGCATATCTCAGGAGCTGC 	47
---------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGGATTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGGATTGAAGGGAGCTCTA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTACA 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTAC 	12
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	19352
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	202
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	169
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTACA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTAC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	292
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTA 	21



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458930-2718 TTTGGATTGAAGGGAGCTCTA GAGCTCCTTGAAGTCCAATAG down 3 0


Secondary structure

GGTTTTGGAGTGGAGCTCCTTGAAGTCCAATAGAGGGTCTTACTGGGTAGATTGAGCTGCTGACTTATGGATCCCACAGCCCTATCCCGTCAATGGGGGGCATTGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTGCATTATCCAAGTTTAGATCCTTGTTTGGATTGAAGGGAGCTCTACACCTCTCT
------------GAGCTCCTTGAAGTCCAATAGA 	1
------------GAGCTCCTTGAAGTCCAATAG 	14
------------GAGCTCCTTGAAGTCCAATA 	3
---------------------------------AGGGTCTTACTGGGTAGATTG 	10
---------------------------------AGGGTCTTACTGGGTAGAT 	1
------------------------------------------------------AGCTGCTGACTTATGGATCCC 	34
------------------------------------------------------AGCTGCTGACTTATGGATCC 	29
------------------------------------------------------AGCTGCTGACTTATGGATC 	19
----------------------------------------------------------------------------------------GTCAATGGGGGGCATTGGATAG 	1
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTGCAT 	1
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTGCA 	1
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTGC 	669
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTG 	9
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCT 	1
-----------------------------------------------------------------------------------------------------------------------TTGCATATCTCAGGAGCTGC 	206
-----------------------------------------------------------------------------------------------------------------------TTGCATATCTCAGGAGCTG 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTTTGGATTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGGATTGAAGGGAGCTCTA 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGGATTGAAGGGAGCTCT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTACA 	15
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTAC 	140
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	131203
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	2972
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	1399
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTACA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTAC 	7
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	2297
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	58
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTA 	81



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458929-2717 TTTGGATTGAAGGGAGCTCTA GAGCTCCTTGAAGTCCAATAG down 3 0


Secondary structure

GGTTTTGGAGTGGAGCTCCTTGAAGTCCAATAGAGGGTCTTACTGGGTAGATTGAGCTGCTGACTTATGGATCCCACAGCCCTATCCCGTCAATGGGGGGCATTGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTGCATTATCCAAGTTTAGATCCTTGTTTGGATTGAAGGGAGCTCTACACCTCTCT
------------GAGCTCCTTGAAGTCCAATAG 	10
-------------AGCTCCTTGAAGTCCAATA 	1
---------------------------------AGGGTCTTACTGGGTAGATTG 	3
---------------------------------AGGGTCTTACTGGGTAGATT 	2
----------------------------------------------------TGAGCTGCTGACTTATGGATC 	3
------------------------------------------------------AGCTGCTGACTTATGGATCCC 	38
------------------------------------------------------AGCTGCTGACTTATGGATCC 	16
------------------------------------------------------AGCTGCTGACTTATGGATC 	4
-----------------------------------------------------------------------------------------------------------------TGTGGCTTGCATATCTCAGGA 	1
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTGCA 	4
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTGC 	565
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTG 	9
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCT 	1
-----------------------------------------------------------------------------------------------------------------------TTGCATATCTCAGGAGCTGC 	118
-------------------------------------------------------------------------------------------------------------------------------------------ATTATCCAAGTTTAGATCCTTG 	1
-------------------------------------------------------------------------------------------------------------------------------------------ATTATCCAAGTTTAGATCCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGGATTGAAGGGAGCTCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGGATTGAAGGGAGCTC 	10
---------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGGATTGAAGGGAGC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGGATTGAAGGGAGCTCTA 	18
----------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGGATTGAAGGGAGCTCT 	6
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTACAC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTACA 	20
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTAC 	184
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	190300
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	2977
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	1592
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTACA 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTAC 	10
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	3043
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	55
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTACA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTA 	115



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458928-2716 TTTGGATTGAAGGGAGCTCTA GAGCTCCTTGAAGTCCAATAG down 3 0


Secondary structure

GGTTTTGGAGTGGAGCTCCTTGAAGTCCAATAGAGGGTCTTACTGGGTAGATTGAGCTGCTGACTTATGGATCCCACAGCCCTATCCCGTCAATGGGGGGCATTGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTGCATTATCCAAGTTTAGATCCTTGTTTGGATTGAAGGGAGCTCTACACCTCTCT
------------GAGCTCCTTGAAGTCCAATAGA 	1
------------GAGCTCCTTGAAGTCCAATAG 	24
------------GAGCTCCTTGAAGTCCAATA 	3
------------GAGCTCCTTGAAGTCCAAT 	1
---------------------------------AGGGTCTTACTGGGTAGATTG 	8
---------------------------------AGGGTCTTACTGGGTAGATT 	2
---------------------------------AGGGTCTTACTGGGTAGAT 	1
------------------------------------------------------AGCTGCTGACTTATGGATCCC 	80
------------------------------------------------------AGCTGCTGACTTATGGATCC 	90
------------------------------------------------------AGCTGCTGACTTATGGATC 	84
--------------------------------------------------------CTGCTGACTTATGGATCCCAC 	1
---------------------------------------------------------------------------------------CGTCAATGGGGGGCATTGGAT 	1
--------------------------------------------------------------------------------------------ATGGGGGGCATTGGATAGGCTTGT 	1
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTGC 	182
----------------------------------------------------------------------------------------------------------------------CTTGCATATCTCAGGAGCTG 	4
-----------------------------------------------------------------------------------------------------------------------TTGCATATCTCAGGAGCTGC 	25
---------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGGATTGAAGGGAGCTCTA 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGGATTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGGATTGAAGGGAGCTCTA 	45
----------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGGATTGAAGGGAGCTCT 	9
----------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGGATTGAAGGGAGCTC 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTACAC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTACA 	59
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTAC 	1110
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	574256
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	9536
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	4910
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTACA 	9
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTAC 	45
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	9154
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	182
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTACA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTA 	275



HuntMi prediction: true miRNA