miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTGGATTGAAGGGAGCTCTT

selected species: Arabidopsis thaliana



11 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
-----------AGAGCTCCTTGAAGTTCAATGG 	1
------------GAGCTCCTTGAAGTTCAATGG 	319
------------GAGCTCCTTGAAGTTCAATG 	1
-------------AGCTCCTTGAAGTTCAATGGA 	4
---------------------------------------------------GTAAAGCTGCTAAGCTATGGATC 	1
-----------------------------------------------------AAAGCTGCTAAGCTATGGATCC 	1
-------------------------------------------------------AGCTGCTAAGCTATGGATCCC 	4
-------------------------------------------------------AGCTGCTAAGCTATGGATCC 	1
-------------------------------------------------------AGCTGCTAAGCTATGGATC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTC 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTTC 	66
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	2415
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	683
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	57
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTT 	10
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415786-5994 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
-----AGAGGAAGAGCTCCTTGAAGT 	1
-------------AGCTCCTTGAAGTTCAATGGA 	1
---------------------------------AGGGTTTAGCAGGGTGAAGTAA 	2
-------------------------------------------------------AGCTGCTAAGCTATGGATCCC 	5
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTTT 	5
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCTTTGGATTGAAGGGAGCTC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTTTGGATTGAAGGGAGC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTC 	16
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCTT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	600
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	74
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	237
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM424847-4989 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
---------------------------------AGGGTTTAGCAGGGTGAAGTAA 	1
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTTT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	11
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	4



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM415785 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
-------------------------------------------------------AGCTGCTAAGCTATGGATCCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	37
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	18



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM366870 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
-----------AGAGCTCCTTGAAGTTCAATGG 	2
------------GAGCTCCTTGAAGTTCAATGG 	186
-------------AGCTCCTTGAAGTTCAATGGA 	15
-----------------------------------------------------AAAGCTGCTAAGCTATGGATCC 	2
------------------------------------------------------AAGCTGCTAAGCTATGGATCC 	1
-------------------------------------------------------AGCTGCTAAGCTATGGATCCC 	10
-------------------------------------------------------AGCTGCTAAGCTATGGATC 	2
-------------------------------------------------------AGCTGCTAAGCTATGGATCC 	2
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTTT 	15
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTGGATTGAAGGGAGCT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTC 	45
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCTT 	47
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCT 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTTC 	117
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	54957
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	1781
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	167
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTTC 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	9
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTT 	160
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTT 	21



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM366869 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
------------GAGCTCCTTGAAGTTCAATGG 	6
-------------AGCTCCTTGAAGTTCAATGGA 	1
-----------------------------------------------------AAAGCTGCTAAGCTATGGATCC 	1
------------------------------------------------------AAGCTGCTAAGCTATGGATCC 	1
-------------------------------------------------------AGCTGCTAAGCTATGGATCCC 	2
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTTT 	14
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTC 	6
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCTT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTTC 	5
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	2361
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	397
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	36
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTT 	8



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM304284 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
------------GAGCTCCTTGAAGTTCAATGG 	44
-------------AGCTCCTTGAAGTTCAATGGA 	1
-------------------------------------------------------AGCTGCTAAGCTATGGATCCC 	5
-------------------------------------------------------AGCTGCTAAGCTATGGATCC 	1
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTTT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTC 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTTC 	23
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	754
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	143
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	10
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM366866 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
------------GAGCTCCTTGAAGTTCAATG 	2
------------GAGCTCCTTGAAGTTCAATGG 	1064
------------GAGCTCCTTGAAGTTCAATGGA 	5
-------------AGCTCCTTGAAGTTCAATGG 	2
-------------AGCTCCTTGAAGTTCAATGGA 	7
-----------------------------------------------------AAAGCTGCTAAGCTATGGATCC 	4
-------------------------------------------------------AGCTGCTAAGCTATGGATCCC 	8
-------------------------------------------------------AGCTGCTAAGCTATGGATCC 	4
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTT 	2
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTTT 	8
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTTTGGATTGAAGGGAGCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTTTGGATTGAAGGGAGC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTC 	30
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTC 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCTT 	88
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCT 	23
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTTC 	1319
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	4806
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	818
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	164712
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	26
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTTC 	32
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTT 	591
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTT 	56



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM304283 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
-----------AGAGCTCCTTGAAGTTCAATGGA 	2
-----------AGAGCTCCTTGAAGTTCAATGG 	2
-----------AGAGCTCCTTGAAGTTCAATG 	1
------------GAGCTCCTTGAAGTTCAATGG 	31
------------GAGCTCCTTGAAGTTCAATG 	2
-------------AGCTCCTTGAAGTTCAATGGA 	214
-----------------------------------------------------AAAGCTGCTAAGCTATGGATCCC 	3
-----------------------------------------------------AAAGCTGCTAAGCTATGGATCC 	28
-----------------------------------------------------AAAGCTGCTAAGCTATGGATC 	2
------------------------------------------------------AAGCTGCTAAGCTATGGATCC 	18
-------------------------------------------------------AGCTGCTAAGCTATGGATCCC 	35
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTTT 	18
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTT 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTC 	6
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCTT 	68
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCT 	11
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTTC 	316
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	220489
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	5638
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	580
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTTC 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTT 	285
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	15
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTT 	62



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Arabidopsis thaliana GSM304285 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
------------GAGCTCCTTGAAGTTCAATGG 	41
------------------------------------------------------AAGCTGCTAAGCTATGGATCC 	3
------------------------------------------------------AAGCTGCTAAGCTATGGATC 	1
-------------------------------------------------------AGCTGCTAAGCTATGGATCC 	1
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTC 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCTT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTTC 	14
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	2188
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	796
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	127
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTT 	9
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	7
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTT 	4



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Arabidopsis thaliana GSM518432-13544 TTTGGATTGAAGGGAGCTCTT GAGCTCCTTGAAGTTCAATGG down 3 0


Secondary structure

GAAGAAGAGGAAGAGCTCCTTGAAGTTCAATGGAGGGTTTAGCAGGGTGAAGTAAAGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATTGATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTTACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATCTCTCC
-----------AGAGCTCCTTGAAGTTCAATGG 	1
------------GAGCTCCTTGAAGTTCAATGG 	516
------------GAGCTCCTTGAAGTTCAATGGA 	1
-------------AGCTCCTTGAAGTTCAATGG 	4
-------------AGCTCCTTGAAGTTCAATGGA 	90
--------------GCTCCTTGAAGTTCAATGG 	1
----------------TCCTTGAAGTTCAATGGAGGG 	1
--------------------------------------------------AGTAAAGCTGCTAAGCTATGGATC 	1
---------------------------------------------------GTAAAGCTGCTAAGCTATGGATCC 	1
---------------------------------------------------GTAAAGCTGCTAAGCTATGGATC 	1
-----------------------------------------------------AAAGCTGCTAAGCTATGGATCC 	1
------------------------------------------------------AAGCTGCTAAGCTATGGATCC 	2
-------------------------------------------------------AGCTGCTAAGCTATGGATCCC 	8
-------------------------------------------------------AGCTGCTAAGCTATGGATCC 	4
-------------------------------------------------------AGCTGCTAAGCTATGGATC 	1
------------------------------------------------------------------------------------------------------------------------TATGGATGCCATATCTCAGGA 	4
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTT 	4
-----------------------------------------------------------------------------------------------------------------------------ATGCCATATCTCAGGAGCTTT 	21
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCTTTGGATTGAAGGGAG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCTTTGGATTGAAGGGAGCTC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTTTGGATTGAAGGGAGC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTGGATTGAAGGGAGCT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTC 	203
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTCT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGATTGAAGGGAGCTCTT 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTC 	6
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCTT 	300
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGGATTGAAGGGAGCTCT 	27
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTTC 	842
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	805
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTTCA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	10665
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTT 	425827
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCT 	42
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTTC 	13
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTT 	1022
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTT 	200
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATTGAAGGGAGCTCTTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTGAAGGGAGCTCTTC 	1



HuntMi prediction: true miRNA