miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTGGTCCCCTTCAACCAGCTA

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540643 TTTGGTCCCCTTCAACCAGCTA GCTGGTCAAATGGAACCAAGTC down 4 0


Secondary structure

TGAAGCAACACGCCTTGCTGTGGCTGGTCAAATGGAACCAAGTCAGGTGTTTCTGCGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAATACAGCC
----------------------GCTGGTCAAATGGAACCAAGTC 	49
----------------------GCTGGTCAAATGGAACCAAGT 	8
------------------------------------------------------------TTTGGTCCCCTTCAACCAGCT 	407
------------------------------------------------------------TTTGGTCCCCTTCAACCAGC 	6
------------------------------------------------------------TTTGGTCCCCTTCAACCAG 	25
------------------------------------------------------------TTTGGTCCCCTTCAACCAGCTA 	573
-------------------------------------------------------------TTGGTCCCCTTCAACCAGCTA 	70
-------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	33


Overlaps with: MNEST005486
Overlaps with miRBase pre-miRNAs: dre-mir-133b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540646 TTTGGTCCCCTTCAACCAGCTA GCTGGTCAAATGGAACCAAGTC down 4 0


Secondary structure

TGAAGCAACACGCCTTGCTGTGGCTGGTCAAATGGAACCAAGTCAGGTGTTTCTGCGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAATACAGCC
----------------------GCTGGTCAAATGGAACCAAGT 	50
----------------------GCTGGTCAAATGGAACCAAG 	4
----------------------GCTGGTCAAATGGAACCAAGTCAG 	1
----------------------GCTGGTCAAATGGAACCAAGTC 	421
------------------------TGGTCAAATGGAACCAAGTCAGG 	8
------------------------TGGTCAAATGGAACCAAGTCAG 	16
------------------------TGGTCAAATGGAACCAAGTC 	3
-----------------------------------------------------------GTTTGGTCCCCTTCAACCAGC 	7
------------------------------------------------------------TTTGGTCCCCTTCAACCAGCTACT 	2
------------------------------------------------------------TTTGGTCCCCTTCAACCAGCTAC 	3
------------------------------------------------------------TTTGGTCCCCTTCAACCAGCTA 	1646
------------------------------------------------------------TTTGGTCCCCTTCAACCAG 	4
------------------------------------------------------------TTTGGTCCCCTTCAACCAGCT 	942
------------------------------------------------------------TTTGGTCCCCTTCAACCAGC 	69
-------------------------------------------------------------TTGGTCCCCTTCAACCAGCT 	44
-------------------------------------------------------------TTGGTCCCCTTCAACCAGCTAC 	3
-------------------------------------------------------------TTGGTCCCCTTCAACCAGCTA 	191
-------------------------------------------------------------TTGGTCCCCTTCAACCAGC 	3
-------------------------------------------------------------TTGGTCCCCTTCAACCAGCTACT 	1


Overlaps with: MNEST005486
Overlaps with miRBase pre-miRNAs: dre-mir-133b
HuntMi prediction: true miRNA