miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTGTACTACACAAAAGTACTG

selected species: Caenorhabditis elegans



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427332-5684 TTTGTACTACACAAAAGTACTG GCACTTTTGTGGTGTGCAAAAA up 3 0


Secondary structure

GTTACAGCGACAGATGCAATTTTTGTACTACACAAAAGTACTGGTCATTTAAGTTGAGGCTCAGCACTTTTGTGGTGTGCAAAAATGGCAAGTTGCTTTTATC
---------------------TTTGTACTACACAAAAGTACTG 	7



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427346-5695 TTTGTACTACACAAAAGTACTG GCACTTTTGTGGTGTGCAAAAA up 3 0


Secondary structure

GTTACAGCGACAGATGCAATTTTTGTACTACACAAAAGTACTGGTCATTTAAGTTGAGGCTCAGCACTTTTGTGGTGTGCAAAAATGGCAAGTTGCTTTTATC
---------------------TTTGTACTACACAAAAGTACTG 	117
---------------------TTTGTACTACACAAAAGTAC 	2
---------------------TTTGTACTACACAAAAGTACT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427345-5693 TTTGTACTACACAAAAGTACTG GCACTTTTGTGGTGTGCAAAAA up 3 0


Secondary structure

GTTACAGCGACAGATGCAATTTTTGTACTACACAAAAGTACTGGTCATTTAAGTTGAGGCTCAGCACTTTTGTGGTGTGCAAAAATGGCAAGTTGCTTTTATC
---------------------TTTGTACTACACAAAAGTACTG 	8



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM297751-9445 TTTGTACTACACAAAAGTACTG GCACTTTTGTGGTGTGCAAAAA up 3 0


Secondary structure

GTTACAGCGACAGATGCAATTTTTGTACTACACAAAAGTACTGGTCATTTAAGTTGAGGCTCAGCACTTTTGTGGTGTGCAAAAATGGCAAGTTGCTTTTATC
---------------------TTTGTACTACACAAAAGTA 	1
---------------------TTTGTACTACACAAAAGTACTG 	412
---------------------TTTGTACTACACAAAAGTAC 	1
---------------------TTTGTACTACACAAAAGTACTGGT 	2
---------------------TTTGTACTACACAAAAGTACT 	21
----------------------TTGTACTACACAAAAGTACTG 	4
-----------------------TGTACTACACAAAAGTACTGGT 	2
-------------------------------------------GTCATTTAAGTTGAGGCTCA 	8
---------------------------------------------------------------GCACTTTTGTGGTGTGCAAAAAT 	1
---------------------------------------------------------------GCACTTTTGTGGTGTGCAAAA 	22
---------------------------------------------------------------GCACTTTTGTGGTGTGCAAA 	7
---------------------------------------------------------------GCACTTTTGTGGTGTGCAA 	1
---------------------------------------------------------------GCACTTTTGTGGTGTGCAAAAA 	113
-----------------------------------------------------------------ACTTTTGTGGTGTGCAAAAA 	2
------------------------------------------------------------------CTTTTGTGGTGTGCAAAAA 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM297752-9446 TTTGTACTACACAAAAGTACTG GCACTTTTGTGGTGTGCAAAAA up 3 0


Secondary structure

GTTACAGCGACAGATGCAATTTTTGTACTACACAAAAGTACTGGTCATTTAAGTTGAGGCTCAGCACTTTTGTGGTGTGCAAAAATGGCAAGTTGCTTTTATC
---------------------TTTGTACTACACAAAAGTACTG 	1189
---------------------TTTGTACTACACAAAAGTACTGG 	3
---------------------TTTGTACTACACAAAAGTACT 	37
---------------------TTTGTACTACACAAAAGTAC 	5
---------------------TTTGTACTACACAAAAGTACTGGT 	2
----------------------TTGTACTACACAAAAGTACTG 	4
-----------------------TGTACTACACAAAAGTACTGGT 	1
-------------------------------------------GTCATTTAAGTTGAGGCTCA 	29
---------------------------------------------------------------GCACTTTTGTGGTGTGCAAAAAT 	1
---------------------------------------------------------------GCACTTTTGTGGTGTGCAAA 	4
---------------------------------------------------------------GCACTTTTGTGGTGTGCAAAAA 	189
---------------------------------------------------------------GCACTTTTGTGGTGTGCAA 	1
---------------------------------------------------------------GCACTTTTGTGGTGTGCAAAA 	37
----------------------------------------------------------------CACTTTTGTGGTGTGCAAAAA 	4
------------------------------------------------------------------CTTTTGTGGTGTGCAAAAA 	6



HuntMi prediction: true miRNA