miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTTGTTCGTTCGGCTCGCGTGA

selected species: Mus musculus



16 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGT 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	93
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	3
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	13
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	2

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	46
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	4

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539877-5198 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTGA 	7
--------------------------------------------------------TTTTGTTCGTTCGGCTCGC 	1
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTG 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	398
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	60
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGAG 	2
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	11
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	11
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	3

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539838 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTG 	2
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	8
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	1

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM527276 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTGA 	1
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGT 	2
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	194
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	3
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	16
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	1
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	2

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539869 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTGA 	6
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTG 	3
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGT 	6
--------------------------------------------------------TTTTGTTCGTTCGGCTCGC 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	236
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	20
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	63
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	1
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	3
----------------------------------------------------------TTGTTCGTTCGGCTCGCGT 	2
-----------------------------------------------------------TGTTCGTTCGGCTCGCGTGA 	1

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539870 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTGA 	21
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTG 	12
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGT 	7
--------------------------------------------------------TTTTGTTCGTTCGGCTCGC 	5
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGAG 	4
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	1170
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	155
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	333
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	2
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	15
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTG 	4
----------------------------------------------------------TTGTTCGTTCGGCTCGCGT 	5

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM527277-2110 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	6
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	209
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	12
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTG 	1
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	4

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Mus musculus GSM539848 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGT 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	8
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	3

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Mus musculus GSM539872 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTGA 	7
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTG 	10
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGT 	6
--------------------------------------------------------TTTTGTTCGTTCGGCTCGC 	4
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	556
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	101
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	225
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	3
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	10
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTG 	3
----------------------------------------------------------TTGTTCGTTCGGCTCGCGT 	7
-----------------------------------------------------------TGTTCGTTCGGCTCGCGTGA 	2

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Mus musculus GSM539871 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGT 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	9
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	5

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Mus musculus GSM539878 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTGA 	3
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCG 	1
--------------------------------------------------------TTTTGTTCGTTCGGCTCGC 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGAGG 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	156
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	6
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	57
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	10
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	3
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTG 	1

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Mus musculus GSM539873 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTGAG 	7
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTGA 	1326
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGT 	666
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCG 	46
--------------------------------------------------------TTTTGTTCGTTCGGCTCGC 	403
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTG 	611
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGAGGC 	17
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGAGG 	13
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGAG 	572
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	101477
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	11327
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	24057
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	1406
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	1576
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTG 	163
----------------------------------------------------------TTGTTCGTTCGGCTCGCGT 	269
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGAG 	5
-----------------------------------------------------------TGTTCGTTCGGCTCGCGTGA 	66
-----------------------------------------------------------TGTTCGTTCGGCTCGCGTG 	5
-----------------------------------------------------------TGTTCGTTCGGCTCGCGTGAG 	2
------------------------------------------------------------GTTCGTTCGGCTCGCGTGA 	3

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Mus musculus GSM539875 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	6
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	1
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	1

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Mus musculus GSM527279-2112 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	90
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	13
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	1
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	2

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Mus musculus GSM539874 TTTGTTCGTTCGGCTCGCGTGA GCGACGAGCCCCTCGCACAAACC down 5 1


Secondary structure

CCGGGTCTTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAG
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTGA 	1
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGT 	3
--------------------------------------------------------TTTTGTTCGTTCGGCTCGCGTG 	4
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTGA 	300
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGTG 	115
---------------------------------------------------------TTTGTTCGTTCGGCTCGCGT 	41
---------------------------------------------------------TTTGTTCGTTCGGCTCGCG 	23
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTGA 	5
----------------------------------------------------------TTGTTCGTTCGGCTCGCGTG 	1
-----------------------------------------------------------TGTTCGTTCGGCTCGCGTGA 	2

Overlaps with: MNEST027878 MNEST028616 MNEST030979 MNEST032044 MNEST033347
Overlaps with miRBase pre-miRNAs: ppy-mir-375 mml-mir-375 hsa-mir-375 rno-mir-375 mmu-mir-375 bta-mir-375 cfa-mir-375 ptr-mir-375
HuntMi prediction: true miRNA