miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTTGTTCGTTTGGCTTAAGTTA

selected species: Drosophila melanogaster

13 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
-----------TACTTGGGCCAAGGGAATGCAAACT 	1
-----------TACTTGGGCCAAGGGAATGC 	1
-----------TACTTGGGCCAAGGGAATGCAAA 	1
-----------TACTTGGGCCAAGGGAATGCAA 	2
------------ACTTGGGCCAAGGGAATGC 	1
------------ACTTGGGCCAAGGGAATGCAAA 	7
------------ACTTGGGCCAAGGGAATGCAA 	25
------------ACTTGGGCCAAGGGAATGCAAACT 	45
------------ACTTGGGCCAAGGGAATGCA 	6
---------------------------------------------------GTTTGTTCGTTTGGCTTAAG 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAG 	27
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	761
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	114
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTATT 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	1610
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTAT 	21
-----------------------------------------------------TTGTTCGTTTGGCTTAAGT 	1
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTT 	3
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTA 	18

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399106-16287	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
-----------TACTTGGGCCAAGGGAATGCA 	1
------------ACTTGGGCCAAGGGAATGCA 	4
------------ACTTGGGCCAAGGGAATGCAA 	2
------------ACTTGGGCCAAGGGAATGCAAACT 	16
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	261
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	35
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTAT 	2
----------------------------------------------------TTTGTTCGTTTGGCTTAAG 	10
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	379
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTA 	5
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTAT 	1
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTT 	1

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM466487_wt_total	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
------------ACTTGGGCCAAGGGAATGCAA 	1
------------ACTTGGGCCAAGGGAATGCAAACT 	3
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	243
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	16
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTAT 	10
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	298
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTA 	6
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTT 	1

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM399105-16286	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
-----------TACTTGGGCCAAGGGAATGCAA 	1
------------ACTTGGGCCAAGGGAATGCAAA 	4
------------ACTTGGGCCAAGGGAATGCAA 	13
------------ACTTGGGCCAAGGGAATGCAAACT 	6
------------ACTTGGGCCAAGGGAATGCA 	2
------------ACTTGGGCCAAGGGAATGCAAAC 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAG 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	62
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	5
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	159
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTAT 	1
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTA 	4

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM360262-14327	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
-----------TACTTGGGCCAAGGGAATGCAAA 	2
-----------TACTTGGGCCAAGGGAATGCAA 	1
------------ACTTGGGCCAAGGGAATGCAAA 	6
------------ACTTGGGCCAAGGGAATGCAA 	8
------------ACTTGGGCCAAGGGAATGCAAACT 	35
------------ACTTGGGCCAAGGGAATGCA 	3
----------------------------------------------------TTTGTTCGTTTGGCTTAAG 	4
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	472
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	31
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTATT 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	889
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTAT 	7
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTATT 	1
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTT 	1
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTA 	6

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360256-14324	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
------------ACTTGGGCCAAGGGAATGCAAACT 	3
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	2
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	14
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTA 	3
-------------------------------------------------------GTTCGTTTGGCTTAAGTTA 	1

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM360260-14326	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
-----------TACTTGGGCCAAGGGAATGCAAACT 	1
-----------TACTTGGGCCAAGGGAATGCAAA 	1
------------ACTTGGGCCAAGGGAATGCAA 	3
------------ACTTGGGCCAAGGGAATGCAAACT 	7
----------------------------------------------------TTTGTTCGTTTGGCTTAAG 	5
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	281
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	18
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTATT 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	592
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTAT 	6
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTT 	1
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTA 	12
------------------------------------------------------TGTTCGTTTGGCTTAAGTT 	1

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM322543-14323	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
-----------TACTTGGGCCAAGGGAATGCA 	2
------------ACTTGGGCCAAGGGAATGCAAA 	2
------------ACTTGGGCCAAGGGAATGCAA 	1
------------ACTTGGGCCAAGGGAATGCAAACT 	8
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	12
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	58
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTAT 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	30
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTATT 	2

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM286604-9792	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
-----------TACTTGGGCCAAGGGAATGCA 	2
------------ACTTGGGCCAAGGGAATGCAAA 	3
------------ACTTGGGCCAAGGGAATGCAA 	2
------------ACTTGGGCCAAGGGAATGCAAACT 	16
------------ACTTGGGCCAAGGGAATGCA 	1
------------ACTTGGGCCAAGGGAATGCAAAC 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	182
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	25
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	253
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTAT 	7
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTT 	3
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTA 	6

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM385744-16261	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	3
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	5

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM322208-14317	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
------------ACTTGGGCCAAGGGAATGCA 	4
------------ACTTGGGCCAAGGGAATGCAAA 	4
------------ACTTGGGCCAAGGGAATGCAA 	7
------------ACTTGGGCCAAGGGAATGCAAACT 	8
-------------CTTGGGCCAAGGGAATGCAA 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	64
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	20
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTAT 	3
----------------------------------------------------TTTGTTCGTTTGGCTTAAG 	11
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	152
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTA 	1

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM385748-16264	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	5
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	8

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Drosophila melanogaster	GSM466492_dcr-2_homozygotes_untreated	TTTGTTCGTTTGGCTTAAGTTA	ACTTGGGCCAAGGGAATGCAAACT	down	2	2

Secondary structure

GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTGATCATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGT
------------ACTTGGGCCAAGGGAATGCAAACT 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAG 	3
----------------------------------------------------TTTGTTCGTTTGGCTTAAGT 	14
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTA 	166
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTTAT 	1
----------------------------------------------------TTTGTTCGTTTGGCTTAAGTT 	133
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTAT 	1
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTT 	5
-----------------------------------------------------TTGTTCGTTTGGCTTAAGTTA 	4

Overlaps with: MNEST036475 MNEST036476
Overlaps with miRBase pre-miRNAs: dme-mir-375 dsi-mir-375
HuntMi prediction: true miRNA