miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTTAATTGTGGAAGCTCTTG

selected species: Brachypodium distachyon



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TTTTAATTGTGGAAGCTCTTG AGATCTTCCATGAGTAAAAAT up 3 0


Secondary structure

GCCAGTCTGAAGCTACATAATTTTTAATTGTGGAAGCTCTTGAAGTTTCGCATGCAGTTCCTCTATATTCCTGTCTGTCAAGTTGAGATCGCAACCCTGCACTGGCCATGCTGCCACCTCGAGGTCACCCATCATTTGACTCATCTCAGTTCACTGCATGTGGAACTTCCAGATCTTCCATGAGTAAAAATCCTGTAGCTTCCAAGGCA
--------------------TTTTTAATTGTGGAAGCTCTTGAA 	1
--------------------TTTTTAATTGTGGAAGCTCTTGA 	5
--------------------TTTTTAATTGTGGAAGCTCTTG 	14
--------------------TTTTTAATTGTGGAAGCTCTT 	62
--------------------TTTTTAATTGTGGAAGCTCT 	1
--------------------TTTTTAATTGTGGAAGCTC 	4
---------------------TTTTAATTGTGGAAGCTCTTGA 	3
---------------------TTTTAATTGTGGAAGCTCTTG 	206
---------------------TTTTAATTGTGGAAGCTCT 	2
----------------------TTTAATTGTGGAAGCTCTTGA 	1
----------------------TTTAATTGTGGAAGCTCTTG 	1
------------------------TAATTGTGGAAGCTCTTGAAGT 	4
------------------------TAATTGTGGAAGCTCTTGAAG 	41
-------------------------AATTGTGGAAGCTCTTGAAGT 	26
--------------------------ATTGTGGAAGCTCTTGAAGTTT 	1
--------------------------ATTGTGGAAGCTCTTGAAGTT 	1
--------------------------ATTGTGGAAGCTCTTGAAGT 	2
-------------------------------------TCTTGAAGTTTCGCATGCAGT 	16
-----------------------------------------------------------------TATTCCTGTCTGTCAAGTTGAGAT 	1
------------------------------------------------------------------ATTCCTGTCTGTCAAGTTGAGATC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TGCATGTGGAACTTCCAGATC 	28
-------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTGGAACTTCCAGATCTTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGAACTTCCAGATCTTCCA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGAACTTCCAGATCTTCCA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTCCAGATCTTCCATGAGT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGATCTTCCATGAGTAAAAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGATCTTCCATGAGTAA 	76
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGATCTTCCATGAGTA 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGATCTTCCATGAGT 	8
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGATCTTCCATGAGTAAAA 	1



HuntMi prediction: true miRNA