miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTTTGCGATGTGTTCCTAATAT

selected species: Homo sapiens

14 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Homo sapiens	GSM651905	TTTTGCGATGTGTTCCTAATAT	ATTGGGGACATTTTGCATTCAT	up	4	0

Secondary structure

CAAAGAAAGATGCTAAACTATTTTTGCGATGTGTTCCTAATATGTAATATAAATGTATTGGGGACATTTTGCATTCATAGTTTTGTATCAATAATA
-AAAGAAAGATGCTAAACTAT 	2
--AAGAAAGATGCTAAACTAT 	7
---------------------TTTTGCGATGTGTTCCTAATAT 	739
---------------------TTTTGCGATGTGTTCCTAATA 	161
---------------------TTTTGCGATGTGTTCCTAAT 	113
---------------------TTTTGCGATGTGTTCCTAA 	29
---------------------TTTTGCGATGTGTTCCTAATATG 	5
----------------------TTTGCGATGTGTTCCTAATAT 	46
----------------------TTTGCGATGTGTTCCTAATA 	7
----------------------TTTGCGATGTGTTCCTAAT 	2
-----------------------TTGCGATGTGTTCCTAATAT 	20
-----------------------TTGCGATGTGTTCCTAATA 	2
------------------------TGCGATGTGTTCCTAATAT 	9
-------------------------------------------------------TATTGGGGACATTTTGCATT 	21
-------------------------------------------------------TATTGGGGACATTTTGCAT 	3
--------------------------------------------------------ATTGGGGACATTTTGCATTCAT 	73
--------------------------------------------------------ATTGGGGACATTTTGCATTCA 	8
--------------------------------------------------------ATTGGGGACATTTTGCATT 	495
--------------------------------------------------------ATTGGGGACATTTTGCATTC 	2
---------------------------------------------------------TTGGGGACATTTTGCATTCATA 	10
---------------------------------------------------------TTGGGGACATTTTGCATTCAT 	106
---------------------------------------------------------TTGGGGACATTTTGCATTCA 	13
---------------------------------------------------------TTGGGGACATTTTGCATTC 	4
-----------------------------------------------------------GGGGACATTTTGCATTCAT 	1

Overlaps with: MNEST027910 MNEST028658
Overlaps with miRBase pre-miRNAs: hsa-mir-450a-2 mml-mir-450a-2 ptr-mir-450a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Homo sapiens	GSM651905	TTTTGCGATGTGTTCCTAATAT	ATTGGGAACATTTTGCATGTAT	up	4	0

Secondary structure

TCAAAAACGATACTAAACTGTTTTTGCGATGTGTTCCTAATATGCACTATAAATATATTGGGAACATTTTGCATGTATAGTTTTGTATCAATATAC
---------------------TTTTGCGATGTGTTCCTAATAT 	739
---------------------TTTTGCGATGTGTTCCTAATA 	161
---------------------TTTTGCGATGTGTTCCTAAT 	113
---------------------TTTTGCGATGTGTTCCTAA 	29
---------------------TTTTGCGATGTGTTCCTAATATG 	5
----------------------TTTGCGATGTGTTCCTAATAT 	46
----------------------TTTGCGATGTGTTCCTAATA 	7
----------------------TTTGCGATGTGTTCCTAAT 	2
-----------------------TTGCGATGTGTTCCTAATAT 	20
-----------------------TTGCGATGTGTTCCTAATA 	2
------------------------TGCGATGTGTTCCTAATAT 	9
-------------------------------------------------------TATTGGGAACATTTTGCATGTAT 	1
--------------------------------------------------------ATTGGGAACATTTTGCATGTAT 	75
--------------------------------------------------------ATTGGGAACATTTTGCATGTA 	5
--------------------------------------------------------ATTGGGAACATTTTGCATGT 	2
---------------------------------------------------------TTGGGAACATTTTGCATGTAT 	9
-----------------------------------------------------------GGGAACATTTTGCATGTAT 	2

Overlaps with: MNEST030379
Overlaps with miRBase pre-miRNAs: ptr-mir-450a-1 hsa-mir-450a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Homo sapiens	GSM531974	TTTTGCGATGTGTTCCTAATAT	ATTGGGAACATTTTGCATGTAT	up	4	0

Secondary structure

TCAAAAACGATACTAAACTGTTTTTGCGATGTGTTCCTAATATGCACTATAAATATATTGGGAACATTTTGCATGTATAGTTTTGTATCAATATAC
---------------------TTTTGCGATGTGTTCCTAATAT 	12
---------------------TTTTGCGATGTGTTCCTAATA 	3
---------------------TTTTGCGATGTGTTCCTAAT 	5
---------------------TTTTGCGATGTGTTCCTAA 	1
--------------------------------------------------------ATTGGGAACATTTTGCATGTAT 	1
--------------------------------------------------------ATTGGGAACATTTTGCATGT 	1

Overlaps with: MNEST030379
Overlaps with miRBase pre-miRNAs: ptr-mir-450a-1 hsa-mir-450a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Homo sapiens	GSM651908	TTTTGCGATGTGTTCCTAATAT	ATTGGGGACATTTTGCATTCAT	up	4	0

Secondary structure

CAAAGAAAGATGCTAAACTATTTTTGCGATGTGTTCCTAATATGTAATATAAATGTATTGGGGACATTTTGCATTCATAGTTTTGTATCAATAATA
--AAGAAAGATGCTAAACTAT 	1
------------------TATTTTTGCGATGTGTTCCTAA 	1
---------------------TTTTGCGATGTGTTCCTAATAT 	674
---------------------TTTTGCGATGTGTTCCTAATA 	133
---------------------TTTTGCGATGTGTTCCTAAT 	159
---------------------TTTTGCGATGTGTTCCTAA 	18
---------------------TTTTGCGATGTGTTCCTAATATG 	2
----------------------TTTGCGATGTGTTCCTAATAT 	19
----------------------TTTGCGATGTGTTCCTAAT 	5
----------------------TTTGCGATGTGTTCCTAATA 	3
-----------------------TTGCGATGTGTTCCTAATAT 	3
-----------------------TTGCGATGTGTTCCTAATA 	5
------------------------TGCGATGTGTTCCTAATAT 	2
-------------------------------------------------------TATTGGGGACATTTTGCATT 	7
--------------------------------------------------------ATTGGGGACATTTTGCATTCAT 	64
--------------------------------------------------------ATTGGGGACATTTTGCATTCA 	12
--------------------------------------------------------ATTGGGGACATTTTGCATT 	440
--------------------------------------------------------ATTGGGGACATTTTGCATTC 	5
--------------------------------------------------------ATTGGGGACATTTTGCATTCATA 	2
---------------------------------------------------------TTGGGGACATTTTGCATTCAT 	87
---------------------------------------------------------TTGGGGACATTTTGCATTCA 	9
---------------------------------------------------------TTGGGGACATTTTGCATTCATA 	5
---------------------------------------------------------TTGGGGACATTTTGCATTC 	3

Overlaps with: MNEST027910 MNEST028658
Overlaps with miRBase pre-miRNAs: hsa-mir-450a-2 mml-mir-450a-2 ptr-mir-450a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Homo sapiens	GSM651908	TTTTGCGATGTGTTCCTAATAT	ATTGGGAACATTTTGCATGTAT	up	4	0

Secondary structure

TCAAAAACGATACTAAACTGTTTTTGCGATGTGTTCCTAATATGCACTATAAATATATTGGGAACATTTTGCATGTATAGTTTTGTATCAATATAC
---------------------TTTTGCGATGTGTTCCTAATAT 	674
---------------------TTTTGCGATGTGTTCCTAATA 	133
---------------------TTTTGCGATGTGTTCCTAAT 	159
---------------------TTTTGCGATGTGTTCCTAA 	18
---------------------TTTTGCGATGTGTTCCTAATATG 	2
----------------------TTTGCGATGTGTTCCTAATAT 	19
----------------------TTTGCGATGTGTTCCTAAT 	5
----------------------TTTGCGATGTGTTCCTAATA 	3
-----------------------TTGCGATGTGTTCCTAATAT 	3
-----------------------TTGCGATGTGTTCCTAATA 	5
------------------------TGCGATGTGTTCCTAATAT 	2
--------------------------------------------------AAATATATTGGGAACATTTTGCATG 	1
-------------------------------------------------------TATTGGGAACATTTTGCATGTAT 	1
--------------------------------------------------------ATTGGGAACATTTTGCATGTAT 	74
--------------------------------------------------------ATTGGGAACATTTTGCATGTA 	6
--------------------------------------------------------ATTGGGAACATTTTGCATG 	1
---------------------------------------------------------TTGGGAACATTTTGCATGTAT 	8

Overlaps with: MNEST030379
Overlaps with miRBase pre-miRNAs: ptr-mir-450a-1 hsa-mir-450a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Homo sapiens	GSM651906	TTTTGCGATGTGTTCCTAATAT	ATTGGGAACATTTTGCATGTAT	up	4	0

Secondary structure

TCAAAAACGATACTAAACTGTTTTTGCGATGTGTTCCTAATATGCACTATAAATATATTGGGAACATTTTGCATGTATAGTTTTGTATCAATATAC
---------------------TTTTGCGATGTGTTCCTAATAT 	442
---------------------TTTTGCGATGTGTTCCTAATA 	61
---------------------TTTTGCGATGTGTTCCTAAT 	80
---------------------TTTTGCGATGTGTTCCTAA 	14
----------------------TTTGCGATGTGTTCCTAATAT 	19
----------------------TTTGCGATGTGTTCCTAAT 	4
----------------------TTTGCGATGTGTTCCTAATA 	3
-----------------------TTGCGATGTGTTCCTAATAT 	10
------------------------TGCGATGTGTTCCTAATAT 	6
------------------------------------------------------ATATTGGGAACATTTTGCATGT 	1
-------------------------------------------------------TATTGGGAACATTTTGCATGTAT 	1
-------------------------------------------------------TATTGGGAACATTTTGCATG 	1
--------------------------------------------------------ATTGGGAACATTTTGCATGTAT 	32
--------------------------------------------------------ATTGGGAACATTTTGCATGTA 	2
--------------------------------------------------------ATTGGGAACATTTTGCATGT 	1
--------------------------------------------------------ATTGGGAACATTTTGCATG 	1
---------------------------------------------------------TTGGGAACATTTTGCATGTAT 	9

Overlaps with: MNEST030379
Overlaps with miRBase pre-miRNAs: ptr-mir-450a-1 hsa-mir-450a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Homo sapiens	GSM651906	TTTTGCGATGTGTTCCTAATAT	ATTGGGGACATTTTGCATTCAT	up	4	0

Secondary structure

CAAAGAAAGATGCTAAACTATTTTTGCGATGTGTTCCTAATATGTAATATAAATGTATTGGGGACATTTTGCATTCATAGTTTTGTATCAATAATA
CAAAGAAAGATGCTAAACTAT 	1
-AAAGAAAGATGCTAAACTAT 	2
------------------TATTTTTGCGATGTGTTCCTAA 	3
-------------------ATTTTTGCGATGTGTTCCTAAT 	1
---------------------TTTTGCGATGTGTTCCTAATAT 	442
---------------------TTTTGCGATGTGTTCCTAATA 	61
---------------------TTTTGCGATGTGTTCCTAAT 	80
---------------------TTTTGCGATGTGTTCCTAA 	14
----------------------TTTGCGATGTGTTCCTAATAT 	19
----------------------TTTGCGATGTGTTCCTAAT 	4
----------------------TTTGCGATGTGTTCCTAATA 	3
-----------------------TTGCGATGTGTTCCTAATAT 	10
------------------------TGCGATGTGTTCCTAATAT 	6
-------------------------------------------------------TATTGGGGACATTTTGCATT 	14
--------------------------------------------------------ATTGGGGACATTTTGCATTCAT 	41
--------------------------------------------------------ATTGGGGACATTTTGCATT 	266
--------------------------------------------------------ATTGGGGACATTTTGCATTCATA 	5
--------------------------------------------------------ATTGGGGACATTTTGCATTCA 	4
--------------------------------------------------------ATTGGGGACATTTTGCATTC 	4
---------------------------------------------------------TTGGGGACATTTTGCATTCAT 	67
---------------------------------------------------------TTGGGGACATTTTGCATTCA 	2
---------------------------------------------------------TTGGGGACATTTTGCATTC 	2
---------------------------------------------------------TTGGGGACATTTTGCATTCATA 	1
----------------------------------------------------------TGGGGACATTTTGCATTCATA 	1
----------------------------------------------------------TGGGGACATTTTGCATTCAT 	1
-----------------------------------------------------------GGGGACATTTTGCATTCAT 	1

Overlaps with: MNEST027910 MNEST028658
Overlaps with miRBase pre-miRNAs: hsa-mir-450a-2 mml-mir-450a-2 ptr-mir-450a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Homo sapiens	GSM494811_K562	TTTTGCGATGTGTTCCTAATAT	ATTGGGAACATTTTGCATGTAT	up	4	0

Secondary structure

TCAAAAACGATACTAAACTGTTTTTGCGATGTGTTCCTAATATGCACTATAAATATATTGGGAACATTTTGCATGTATAGTTTTGTATCAATATAC
---------------------TTTTGCGATGTGTTCCTAATAT 	8

Overlaps with: MNEST030379
Overlaps with miRBase pre-miRNAs: ptr-mir-450a-1 hsa-mir-450a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Homo sapiens	GSM494811_K562	TTTTGCGATGTGTTCCTAATAT	ATTGGGGACATTTTGCATTCAT	up	4	0

Secondary structure

CAAAGAAAGATGCTAAACTATTTTTGCGATGTGTTCCTAATATGTAATATAAATGTATTGGGGACATTTTGCATTCATAGTTTTGTATCAATAATA
---------------------TTTTGCGATGTGTTCCTAATAT 	8
--------------------------------------------------------ATTGGGGACATTTTGCATTCA 	1
--------------------------------------------------------ATTGGGGACATTTTGCATTCAT 	1
---------------------------------------------------------TTGGGGACATTTTGCATTCAT 	4

Overlaps with: MNEST027910 MNEST028658
Overlaps with miRBase pre-miRNAs: hsa-mir-450a-2 mml-mir-450a-2 ptr-mir-450a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Homo sapiens	GSM651907	TTTTGCGATGTGTTCCTAATAT	ATTGGGGACATTTTGCATTCAT	up	4	0

Secondary structure

CAAAGAAAGATGCTAAACTATTTTTGCGATGTGTTCCTAATATGTAATATAAATGTATTGGGGACATTTTGCATTCATAGTTTTGTATCAATAATA
--AAGAAAGATGCTAAACTAT 	4
--------------------TTTTTGCGATGTGTTCCTAA 	2
---------------------TTTTGCGATGTGTTCCTAATAT 	603
---------------------TTTTGCGATGTGTTCCTAATA 	128
---------------------TTTTGCGATGTGTTCCTAAT 	141
---------------------TTTTGCGATGTGTTCCTAA 	23
----------------------TTTGCGATGTGTTCCTAATAT 	14
----------------------TTTGCGATGTGTTCCTAATA 	4
----------------------TTTGCGATGTGTTCCTAAT 	4
-----------------------TTGCGATGTGTTCCTAATAT 	10
-----------------------TTGCGATGTGTTCCTAATA 	1
------------------------TGCGATGTGTTCCTAATAT 	5
-------------------------------------------------------TATTGGGGACATTTTGCATT 	13
-------------------------------------------------------TATTGGGGACATTTTGCATTCA 	3
-------------------------------------------------------TATTGGGGACATTTTGCAT 	1
-------------------------------------------------------TATTGGGGACATTTTGCATTC 	1
--------------------------------------------------------ATTGGGGACATTTTGCATTCAT 	46
--------------------------------------------------------ATTGGGGACATTTTGCATT 	330
--------------------------------------------------------ATTGGGGACATTTTGCATTCA 	6
--------------------------------------------------------ATTGGGGACATTTTGCATTC 	5
--------------------------------------------------------ATTGGGGACATTTTGCATTCATA 	2
---------------------------------------------------------TTGGGGACATTTTGCATTCAT 	87
---------------------------------------------------------TTGGGGACATTTTGCATTC 	9
---------------------------------------------------------TTGGGGACATTTTGCATTCA 	5
---------------------------------------------------------TTGGGGACATTTTGCATTCATA 	3
-----------------------------------------------------------GGGGACATTTTGCATTCAT 	3

Overlaps with: MNEST027910 MNEST028658
Overlaps with miRBase pre-miRNAs: hsa-mir-450a-2 mml-mir-450a-2 ptr-mir-450a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Homo sapiens	GSM651907	TTTTGCGATGTGTTCCTAATAT	ATTGGGAACATTTTGCATGTAT	up	4	0

Secondary structure

TCAAAAACGATACTAAACTGTTTTTGCGATGTGTTCCTAATATGCACTATAAATATATTGGGAACATTTTGCATGTATAGTTTTGTATCAATATAC
--------------------TTTTTGCGATGTGTTCCTAA 	2
---------------------TTTTGCGATGTGTTCCTAATAT 	603
---------------------TTTTGCGATGTGTTCCTAATA 	128
---------------------TTTTGCGATGTGTTCCTAAT 	141
---------------------TTTTGCGATGTGTTCCTAA 	23
----------------------TTTGCGATGTGTTCCTAATAT 	14
----------------------TTTGCGATGTGTTCCTAATA 	4
----------------------TTTGCGATGTGTTCCTAAT 	4
-----------------------TTGCGATGTGTTCCTAATAT 	10
-----------------------TTGCGATGTGTTCCTAATA 	1
------------------------TGCGATGTGTTCCTAATAT 	5
--------------------------------------------------------ATTGGGAACATTTTGCATGTAT 	43
--------------------------------------------------------ATTGGGAACATTTTGCATGTA 	5
--------------------------------------------------------ATTGGGAACATTTTGCATG 	1
---------------------------------------------------------TTGGGAACATTTTGCATGTAT 	2

Overlaps with: MNEST030379
Overlaps with miRBase pre-miRNAs: ptr-mir-450a-1 hsa-mir-450a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Homo sapiens	GSM494812_HL60	TTTTGCGATGTGTTCCTAATAT	ATTGGGAACATTTTGCATGTAT	up	4	0

Secondary structure

TCAAAAACGATACTAAACTGTTTTTGCGATGTGTTCCTAATATGCACTATAAATATATTGGGAACATTTTGCATGTATAGTTTTGTATCAATATAC
---------------------TTTTGCGATGTGTTCCTAATAT 	23
---------------------TTTTGCGATGTGTTCCTAATA 	3
---------------------TTTTGCGATGTGTTCCTAAT 	3
--------------------------------------------------------ATTGGGAACATTTTGCATGTAT 	4

Overlaps with: MNEST030379
Overlaps with miRBase pre-miRNAs: ptr-mir-450a-1 hsa-mir-450a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Homo sapiens	GSM494812_HL60	TTTTGCGATGTGTTCCTAATAT	ATTGGGGACATTTTGCATTCAT	up	4	0

Secondary structure

CAAAGAAAGATGCTAAACTATTTTTGCGATGTGTTCCTAATATGTAATATAAATGTATTGGGGACATTTTGCATTCATAGTTTTGTATCAATAATA
---------------------TTTTGCGATGTGTTCCTAATAT 	23
---------------------TTTTGCGATGTGTTCCTAATA 	3
---------------------TTTTGCGATGTGTTCCTAAT 	3
-------------------------------------------------------TATTGGGGACATTTTGCATT 	1
--------------------------------------------------------ATTGGGGACATTTTGCATTCAT 	19
---------------------------------------------------------TTGGGGACATTTTGCATTCAT 	13
---------------------------------------------------------TTGGGGACATTTTGCATTCA 	1

Overlaps with: MNEST027910 MNEST028658
Overlaps with miRBase pre-miRNAs: hsa-mir-450a-2 mml-mir-450a-2 ptr-mir-450a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Homo sapiens	GSM531975	TTTTGCGATGTGTTCCTAATAT	ATTGGGAACATTTTGCATGTAT	up	4	0

Secondary structure

TCAAAAACGATACTAAACTGTTTTTGCGATGTGTTCCTAATATGCACTATAAATATATTGGGAACATTTTGCATGTATAGTTTTGTATCAATATAC
---------------------TTTTGCGATGTGTTCCTAATAT 	33
---------------------TTTTGCGATGTGTTCCTAATA 	17
---------------------TTTTGCGATGTGTTCCTAAT 	16
---------------------TTTTGCGATGTGTTCCTAA 	1
--------------------------------------------------------ATTGGGAACATTTTGCATGTAT 	8

Overlaps with: MNEST030379
Overlaps with miRBase pre-miRNAs: ptr-mir-450a-1 hsa-mir-450a-1
HuntMi prediction: true miRNA