miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTTTTCATTATTGCTCCTGACC

selected species: Mus musculus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527276 TTTTTCATTATTGCTCCTGACC TCAAGAGCAATAACGAAAAATG down 2 0


Secondary structure

TTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTCTCAT
------------TCAAGAGCAATAACGAAAAATG 	98
------------TCAAGAGCAATAACGAAAAA 	2
------------TCAAGAGCAATAACGAAAAAT 	29
------------TCAAGAGCAATAACGAAAAATGT 	261
------------TCAAGAGCAATAACGAAAAATGTT 	29
-------------CAAGAGCAATAACGAAAAATG 	2
-------------CAAGAGCAATAACGAAAAATGT 	1
--------------AAGAGCAATAACGAAAAATGTT 	9
--------------AAGAGCAATAACGAAAAATG 	1
--------------AAGAGCAATAACGAAAAATGT 	4
--------------AAGAGCAATAACGAAAAAT 	3
---------------AGAGCAATAACGAAAAATGTTT 	1
----------------GAGCAATAACGAAAAATGTT 	9
----------------GAGCAATAACGAAAAATGT 	7
------------------------------------------------ACCGTTTTTCATTATTGCTCCTG 	1
------------------------------------------------ACCGTTTTTCATTATTGCTCCT 	1
-------------------------------------------------CCGTTTTTCATTATTGCTCCT 	2
-------------------------------------------------CCGTTTTTCATTATTGCTCCTG 	1
--------------------------------------------------CGTTTTTCATTATTGCTCCTG 	1
--------------------------------------------------CGTTTTTCATTATTGCTCCTGA 	4
---------------------------------------------------GTTTTTCATTATTGCTCCTGACC 	82
---------------------------------------------------GTTTTTCATTATTGCTCCTGAC 	10
---------------------------------------------------GTTTTTCATTATTGCTCCTGA 	4
---------------------------------------------------GTTTTTCATTATTGCTCCTGACCC 	2
----------------------------------------------------TTTTTCATTATTGCTCCTGACC 	447
----------------------------------------------------TTTTTCATTATTGCTCCTGA 	10
----------------------------------------------------TTTTTCATTATTGCTCCTGAC 	29
----------------------------------------------------TTTTTCATTATTGCTCCTG 	1
-----------------------------------------------------TTTTCATTATTGCTCCTGACC 	3
------------------------------------------------------TTTCATTATTGCTCCTGACC 	1


Overlaps with: MNEST005218
Overlaps with miRBase pre-miRNAs: mmu-mir-335
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527279-2112 TTTTTCATTATTGCTCCTGACC TCAAGAGCAATAACGAAAAATG down 2 0


Secondary structure

TTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTCTCAT
------------TCAAGAGCAATAACGAAAAAT 	107
------------TCAAGAGCAATAACGAAAAATGTT 	66
------------TCAAGAGCAATAACGAAAAATGT 	633
------------TCAAGAGCAATAACGAAAAATG 	333
------------TCAAGAGCAATAACGAAAAA 	4
------------TCAAGAGCAATAACGAAAA 	2
-------------CAAGAGCAATAACGAAAAATG 	4
-------------CAAGAGCAATAACGAAAAATGT 	3
-------------CAAGAGCAATAACGAAAAATGTT 	1
--------------AAGAGCAATAACGAAAAAT 	4
--------------AAGAGCAATAACGAAAAATG 	10
--------------AAGAGCAATAACGAAAAATGTT 	58
--------------AAGAGCAATAACGAAAAATGT 	19
---------------AGAGCAATAACGAAAAATGTTT 	3
---------------AGAGCAATAACGAAAAATG 	1
----------------GAGCAATAACGAAAAATGTT 	12
----------------GAGCAATAACGAAAAATGT 	18
-----------------AGCAATAACGAAAAATGTT 	4
-------------------------------------------------CCGTTTTTCATTATTGCTCCT 	2
-------------------------------------------------CCGTTTTTCATTATTGCTCCTG 	2
--------------------------------------------------CGTTTTTCATTATTGCTCCTGA 	10
--------------------------------------------------CGTTTTTCATTATTGCTCCTG 	2
---------------------------------------------------GTTTTTCATTATTGCTCCTGA 	10
---------------------------------------------------GTTTTTCATTATTGCTCCTGACC 	301
---------------------------------------------------GTTTTTCATTATTGCTCCTGAC 	38
---------------------------------------------------GTTTTTCATTATTGCTCCT 	1
----------------------------------------------------TTTTTCATTATTGCTCCTG 	5
----------------------------------------------------TTTTTCATTATTGCTCCTGA 	32
----------------------------------------------------TTTTTCATTATTGCTCCTGACCC 	1
----------------------------------------------------TTTTTCATTATTGCTCCTGAC 	140
----------------------------------------------------TTTTTCATTATTGCTCCTGACC 	1353
-----------------------------------------------------TTTTCATTATTGCTCCTGACCC 	1
-----------------------------------------------------TTTTCATTATTGCTCCTGACC 	1
------------------------------------------------------TTTCATTATTGCTCCTGACC 	4


Overlaps with: MNEST005218
Overlaps with miRBase pre-miRNAs: mmu-mir-335
HuntMi prediction: true miRNA