miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGGACCAGGCTTCATTCC

selected species: Oryza sativa



100 records found  

Showing records 51 - 100

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#specieslibrarymiRNAmiRNA*armmismatchesbulges
51 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCATTCC TTTGTTGTCTGGTTCAAGG down 5 0


Secondary structure

TCGGTTAAGGGGTTTGTTGTCTGGTTCAAGGCCTCCTGCTGTCCTACATCACATTTTTTTTTCTTTGTTCTGAATTTCTGATGGATGTGTGTGTGCATGATGCATGGCTGGTGGTGACCTCGGACCAGGCTTCATTCCCTTTAACCA
----------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
-----------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCT 	14
-----------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	169
-----------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	219
-------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
52 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
--------------------GGGGAATGTTGTCTGGCTCGG 	1
---------------------GGGAATGTTGTCTGGCTCGG 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	2
----------------------GGAATGTTGTCTGGCTCGGG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	179
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	15
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12295
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	169
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	219
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	664


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
53 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCATTCC AATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

TGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCC
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	53
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	14
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	219
----------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	3

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
54 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	3
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	179
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	15
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	15
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12295
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	169
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	219
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	1
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	664

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
55 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	2
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	12
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	2
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12295
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	169
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	219
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	664
------------------------------------------------------------------------------------------------------------AGGCTTCATTCCCCCCAACTC 	2

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
56 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	2
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	20
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	225
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------AGAGATAGCTTCAAAACATTAGAT 	1

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
57 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	20
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	225
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
58 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCTC GGAATGGAGGCTGATCCAAGA down 5 0


Secondary structure

GAGGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTTGC
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	20
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	1
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	22

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
59 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCC GTTTGTTGTCTGGTTCAAGG down 5 0


Secondary structure

CTCGGTTAAGGGGTTTGTTGTCTGGTTCAAGGCCTCCTGCTGTCCTACATCACATTTTTTTTTCTTTGTTCTGAATTTCTGATGGATGTGTGTGTGCATGATGCATGGCTGGTGGTGACCTCGGACCAGGCTTCATTCCCTTTAACCAG
------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
60 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	20
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	225
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
61 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCTC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	1
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	22

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
62 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCT 	1
----------------------GGAATGTTGTCTGGCTCGAGGTGCA 	1
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	20
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	225
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
63 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	25
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	225
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
64 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	1
------------------------------------------GGAATGTTGTCTGGTTCAA 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	38
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	371
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
65 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
------------------------------------------GGAATGTCGTCTGGCCTGAGA 	1
--------------------------------------------AATGTCGTCTGGCCTGAGATC 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	38
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	371
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
66 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCTC GGAATGGAGGCTGATCCAAGA down 5 0


Secondary structure

GAGGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTTGC
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	38
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	38

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
67 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
-----------------TGAGGGGAATGTTGTCTGGCT 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	38
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	371
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
68 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
-----------------TGAGGGGAATGTTGTCTGGCT 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	4
----------------------GGAATGTTGTCTGGCTCGAGGTGCA 	1
------------------------AATGTTGTCTGGCTCGAGGTG 	2
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	38
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	371
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
69 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCTC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
------------GGAATGTTGGCTGGCTCGAGG 	2
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	38

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
70 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	66
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	371
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
71 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
--------------------------------GCTTCTGAGTGGAATGTTGTCTGG 	1
-----------------------------------------TGGAATGTTGTCTGGTTCAAGGTC 	3
------------------------------------------GGAATGTTGTCTGGTTCAAGGT 	3
------------------------------------------GGAATGTTGTCTGGTTCAAGGTCT 	10
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	47
-----------------------------------------------GTTGTCTGGTTCAAGGTCTCATGC 	2
-----------------------------------------------GTTGTCTGGTTCAAGGTCT 	1
------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	63
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	12
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCCT 	3
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTCA 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	173
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
72 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	12
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCCT 	3
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTCA 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	173
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
73 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCTC GGAATGGAGGCTGATCCAAGA down 5 0


Secondary structure

GAGGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTTGC
--------------TGGTGTCTGGAATGGAGGCTGATC 	1
------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCC 	1
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	12
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	23

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
74 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
-------------------AGGGGAATGTTGTCTGGCTCGGGG 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	63
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	12
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	173
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGGCTTCATTCCCCCCAAA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
75 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCTC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	23

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
76 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
---------------------GGGAATGTTGTCTGGCTCGAGGTG 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	7
----------------------GGAATGTTGTCTGGCTCGAGGTG 	1
----------------------GGAATGTTGTCTGGCTCGAGGTGC 	3
------------------------AATGTTGTCTGGCTCGAGGTG 	2
----------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	63
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	12
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCCT 	3
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTCA 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	173
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
77 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------GTTGAGGGGAATGTTGTCTGG 	1
---------------GTTGAGGGGAATGTTGTCTGGTCC 	13
-------------------AGGGGAATGTTGTCTGGTCCGAGAC 	1
----------------------GGAATGTTGTCTGGTCCGAGA 	6
----------------------GGAATGTTGTCTGGTCCGAGACCT 	1
-----------------------GAATGTTGTCTGGTCCGAGAC 	1
-----------------------GAATGTTGTCTGGTCCGAGACC 	1
-------------------------ATGTTGTCTGGTCCGAGACCT 	1
-------------------------------------CCGAGACCTAACACCGGGCGGAA 	1
--------------------------------------------------------------------------------------------------GTTTCGGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	27
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	173
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------------------------------------------------ACCAGGCTTCATTCCCCCCAACTC 	4

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
78 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	174
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1000
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	18
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	5

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
79 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	174
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1000
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	18
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	5

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
80 Oryza sativa GSM520637-18674 TCTCGGACCAGGCTTCATTCC AATGGAGGCTGATCCAAGATC down 3 0


Secondary structure

GGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTT
------------TGGTGTCTGGAATGGAGGCTG 	2
------------TGGTGTCTGGAATGGAGGCTGATC 	1
------------TGGTGTCTGGAATGGAGGCT 	1
----------------------AATGGAGGCTGATCCAAGATC 	1
------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	174
-------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	104
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	1

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
81 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCTC 	6
----------------------GGAATGTTGTCTGGCTCGGGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	174
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1000
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	18
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	5


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
82 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCTC 	6
----------------------GGAATGTTGTCTGGCTCGAGG 	7
-------------------------ATGTTGTCTGGCTCGAGGTGC 	2
--------------------------------------------------AGAAACCTCTGATCGATCAGGT 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	174
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1000
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	18
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	5

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
83 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCTC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	104
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	1

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
84 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	3
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	37
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	4
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1000
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	18
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	5

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
85 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
----------------------------------TTCTGAGTGGAATGTTGTCTG 	1
----------------------------------TTCTGAGTGGAATGTTGTCT 	1
-----------------------------------------TGGAATGTTGTCTGGTTCAAGGTC 	1
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	6
-------------------------------------------GAATGTTGTCTGGTTCAAGG 	1
--------------------------------------------------------------------------------------------------------------------------GTGGGATCTCGGACCAGGCTTCAT 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	538
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	20
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	11
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	3
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18391
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	19
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	94
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	170

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
86 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
-------------------------------------TGAGAGGAATGTCGTCTGGCC 	2
-----------------------------------------------------------------------------------CACGTGGACGGTCTCGGACCAGG 	1
--------------------------------------------------------------------------------------GTGGACGGTCTCGGACCAGGCTT 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	538
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	20
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	11
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	3
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18391
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	19
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	94
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	170

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
87 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCC AATGGAGGCTGATCCAAGA down 3 0


Secondary structure

GGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTT
----------------------AATGGAGGCTGATCCAAGATC 	1
-----------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	1
------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	538
------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	11
-------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
-------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCTC 	1
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1681
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	51
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCA 	3
---------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	7
----------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	13

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
88 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCC TTTGTTGTCTGGTTCAAGG down 5 0


Secondary structure

TCGGTTAAGGGGTTTGTTGTCTGGTTCAAGGCCTCCTGCTGTCCTACATCACATTTTTTTTTCTTTGTTCTGAATTTCTGATGGATGTGTGTGTGCATGATGCATGGCTGGTGGTGACCTCGGACCAGGCTTCATTCCCTTTAACCA
---------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	11
----------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	3
----------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
-----------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
-----------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
-----------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCT 	19
-----------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCTT 	5
-----------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCTTT 	1
------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
89 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCT 	5
-----------------TGAGGGGAATGTTGTCTGGCTC 	2
-----------------TGAGGGGAATGTTGTCTGG 	1
--------------------GGGGAATGTTGTCTGGCTCGG 	3
--------------------GGGGAATGTTGTCTGGCTCGGGGC 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	538
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	20
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	11
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18391
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	94
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	170


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
90 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCT 	5
-----------------TGAGGGGAATGTTGTCTGGCTC 	2
-----------------TGAGGGGAATGTTGTCTGG 	1
---------------------GGGAATGTTGTCTGGCTCGAG 	3
----------------------GGAATGTTGTCTGGCTCGAGG 	50
----------------------GGAATGTTGTCTGGCTCGAG 	12
----------------------GGAATGTTGTCTGGCTCGA 	4
-----------------------GAATGTTGTCTGGCTCGAG 	1
-----------------------------------------------TGGAGAAACCTCTGATCGATCAGGT 	1
------------------------------------------------GGAGAAACCTCTGATCGATCAGGT 	1
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	538
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	20
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	11
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	3
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18391
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	19
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	94
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	170

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
91 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCC AATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

TGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCC
----------GGAATGTTGGCTGGCTCGAGG 	13
----------GGAATGTTGGCTGGCTCGAG 	1
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1681
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	51
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
---------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	7
----------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	13

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
92 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------GTTGAGGGGAATGTTGTCT 	1
----------------TTGAGGGGAATGTTGTCTGGT 	1
-----------------TGAGGGGAATGTTGTCTGGTC 	1
-----------------TGAGGGGAATGTTGTCTGG 	1
----------------------GGAATGTTGTCTGGTCCGAGA 	1
-------------------------ATGTTGTCTGGTCCGAGACCT 	2
--------------------------------------------------------------------------------------------------GTTTCGGACCAGGCTTCATTC 	4
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	2
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	895
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	8
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	7
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	4
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18391
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	2
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	94
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	1
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	170

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
93 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
------------------------------------------GGAATGTTGTCTGGTTCAA 	2
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	2
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	1129
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	12
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	6
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	11
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	9759
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	3
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	7
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	27

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
94 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	1129
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	12
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	6
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	11
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	9759
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	3
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	7
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	27

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
95 Oryza sativa GSM520639-18678 TCTCGGACCAGGCTTCATTCC AATGGAGGCTGATCCAAGATC down 3 0


Secondary structure

GGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTT
------------TGGTGTCTGGAATGGAGGCTG 	9
------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	1129
------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	12
------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCTC 	1
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1075
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	9
----------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	4

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
96 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCC GTTTGTTGTCTGGTTCAAGG down 5 0


Secondary structure

CTCGGTTAAGGGGTTTGTTGTCTGGTTCAAGGCCTCCTGCTGTCCTACATCACATTTTTTTTTCTTTGTTCTGAATTTCTGATGGATGTGTGTGTGCATGATGCATGGCTGGTGGTGACCTCGGACCAGGCTTCATTCCCTTTAACCAG
----------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTCC 	4
-----------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	11
------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCTTT 	3
------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCTT 	6
------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCT 	23
------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
-------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
97 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCT 	20
-----------------TGAGGGGAATGTTGTCTGGC 	2
-----------------TGAGGGGAATGTTGTCTGGCTC 	36
--------------------GGGGAATGTTGTCTGGCTCGG 	2
----------------------GGAATGTTGTCTGGCTCGGGG 	23
----------------------GGAATGTTGTCTGGCTCGGG 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	1129
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	12
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	6
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	11
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	32
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	9759
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	7
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	27


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
98 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCT 	20
-----------------TGAGGGGAATGTTGTCTGGC 	2
-----------------TGAGGGGAATGTTGTCTGGCTC 	36
---------------------GGGAATGTTGTCTGGCTCGAG 	5
----------------------GGAATGTTGTCTGGCTCGAGGT 	10
----------------------GGAATGTTGTCTGGCTCGAGG 	106
-----------------------GAATGTTGTCTGGCTCGAGG 	1
------------------------AATGTTGTCTGGCTCGAGGTG 	6
-------------------------ATGTTGTCTGGCTCGAGGTGCA 	2
-------------------------ATGTTGTCTGGCTCGAGGTGC 	12
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	1129
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	12
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	6
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	11
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	9759
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	3
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	7
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	27

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
99 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCTC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
------------GGAATGTTGGCTGGCTCGAGG 	21
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1075
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	9
------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	4

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
100 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------GTTGAGGGGAATGTTGTCTGGTCC 	1
-----------------TGAGGGGAATGTTGTCTGGTC 	5
----------------------GGAATGTTGTCTGGTCCGAGA 	6
----------------------GGAATGTTGTCTGGTCCGAGACCT 	1
-----------------------GAATGTTGTCTGGTCCGAGAC 	1
-------------------------ATGTTGTCTGGTCCGAGACCT 	91
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTC 	2
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	33
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	21
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	5
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	25
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	4807
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	1
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	32
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	9759
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	7
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	27

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA