miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGGACCAGGCTTCATTCCCC

selected species: Oryza sativa



65 records found  

Showing records 51 - 65

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#specieslibrarymiRNAmiRNA*armmismatchesbulges
51 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	174
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1000
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	18
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	5


Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
52 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	174
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1000
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	18
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	5


Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
53 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCTC 	6
----------------------GGAATGTTGTCTGGCTCGGGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	174
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1000
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	18
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	5



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
54 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCTC 	6
----------------------GGAATGTTGTCTGGCTCGAGG 	7
-------------------------ATGTTGTCTGGCTCGAGGTGC 	2
--------------------------------------------------AGAAACCTCTGATCGATCAGGT 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	174
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1000
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	18
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	5


Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
55 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	3
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	37
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	4
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1000
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	18
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	5


Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
56 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
----------------------------------TTCTGAGTGGAATGTTGTCTG 	1
----------------------------------TTCTGAGTGGAATGTTGTCT 	1
-----------------------------------------TGGAATGTTGTCTGGTTCAAGGTC 	1
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	6
-------------------------------------------GAATGTTGTCTGGTTCAAGG 	1
--------------------------------------------------------------------------------------------------------------------------GTGGGATCTCGGACCAGGCTTCAT 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	538
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	20
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	11
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	3
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18391
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	19
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	94
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	170


Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
57 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
-------------------------------------TGAGAGGAATGTCGTCTGGCC 	2
-----------------------------------------------------------------------------------CACGTGGACGGTCTCGGACCAGG 	1
--------------------------------------------------------------------------------------GTGGACGGTCTCGGACCAGGCTT 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	538
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	20
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	11
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	3
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18391
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	19
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	94
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	170


Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
58 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCT 	5
-----------------TGAGGGGAATGTTGTCTGGCTC 	2
-----------------TGAGGGGAATGTTGTCTGG 	1
--------------------GGGGAATGTTGTCTGGCTCGG 	3
--------------------GGGGAATGTTGTCTGGCTCGGGGC 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	538
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	20
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	11
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18391
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	94
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	170



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
59 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCT 	5
-----------------TGAGGGGAATGTTGTCTGGCTC 	2
-----------------TGAGGGGAATGTTGTCTGG 	1
---------------------GGGAATGTTGTCTGGCTCGAG 	3
----------------------GGAATGTTGTCTGGCTCGAGG 	50
----------------------GGAATGTTGTCTGGCTCGAG 	12
----------------------GGAATGTTGTCTGGCTCGA 	4
-----------------------GAATGTTGTCTGGCTCGAG 	1
-----------------------------------------------TGGAGAAACCTCTGATCGATCAGGT 	1
------------------------------------------------GGAGAAACCTCTGATCGATCAGGT 	1
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	538
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	20
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	11
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	3
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18391
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	19
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	94
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	170


Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
60 Oryza sativa GSM693279 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------GTTGAGGGGAATGTTGTCT 	1
----------------TTGAGGGGAATGTTGTCTGGT 	1
-----------------TGAGGGGAATGTTGTCTGGTC 	1
-----------------TGAGGGGAATGTTGTCTGG 	1
----------------------GGAATGTTGTCTGGTCCGAGA 	1
-------------------------ATGTTGTCTGGTCCGAGACCT 	2
--------------------------------------------------------------------------------------------------GTTTCGGACCAGGCTTCATTC 	4
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	2
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	895
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	8
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	7
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	4
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18391
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	625
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2041
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	2
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	94
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	4
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	1
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	170


Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
61 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
------------------------------------------GGAATGTTGTCTGGTTCAA 	2
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	2
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	1129
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	12
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	6
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	11
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	9759
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	3
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	7
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	27


Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
62 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	1129
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	12
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	6
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	11
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	9759
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	3
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	7
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	27


Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
63 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCT 	20
-----------------TGAGGGGAATGTTGTCTGGC 	2
-----------------TGAGGGGAATGTTGTCTGGCTC 	36
--------------------GGGGAATGTTGTCTGGCTCGG 	2
----------------------GGAATGTTGTCTGGCTCGGGG 	23
----------------------GGAATGTTGTCTGGCTCGGG 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	1129
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	12
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	6
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	11
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	32
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	9759
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	7
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	27



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
64 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCT 	20
-----------------TGAGGGGAATGTTGTCTGGC 	2
-----------------TGAGGGGAATGTTGTCTGGCTC 	36
---------------------GGGAATGTTGTCTGGCTCGAG 	5
----------------------GGAATGTTGTCTGGCTCGAGGT 	10
----------------------GGAATGTTGTCTGGCTCGAGG 	106
-----------------------GAATGTTGTCTGGCTCGAGG 	1
------------------------AATGTTGTCTGGCTCGAGGTG 	6
-------------------------ATGTTGTCTGGCTCGAGGTGCA 	2
-------------------------ATGTTGTCTGGCTCGAGGTGC 	12
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	1129
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	12
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	6
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	11
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	9759
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	3
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	7
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	27


Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
65 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------GTTGAGGGGAATGTTGTCTGGTCC 	1
-----------------TGAGGGGAATGTTGTCTGGTC 	5
----------------------GGAATGTTGTCTGGTCCGAGA 	6
----------------------GGAATGTTGTCTGGTCCGAGACCT 	1
-----------------------GAATGTTGTCTGGTCCGAGAC 	1
-------------------------ATGTTGTCTGGTCCGAGACCT 	91
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTC 	2
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	33
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	21
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	5
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	25
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	4807
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	1
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	32
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	9759
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	109
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	7
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	3
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	27


Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA