miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGACAGAAGAGAGTGAGCAC

selected species: Oryza sativa



104 records found  

Showing records 101 - 104

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#specieslibrarymiRNAmiRNA*armmismatchesbulges
101 Oryza sativa GSM520639-18678 TTGACAGAAGAGAGTGAGCAC GCTCACTCCTCTTTCTGTCACCC up 2 2


Secondary structure

AAATTTCTAGCACGGAGAAGCTCTCATGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGGCCGGCATAAAATCTATCCCGTCCTCGCCGCGTGCTCACTCCTCTTTCTGTCACCCTCTTTCTCTCAGGGCTCAACTCCTATCC
------------------------------ATTGACAGAAGAGAGTGAGCA 	7
------------------------------ATTGACAGAAGAGAGTGAGC 	2
------------------------------ATTGACAGAAGAGAGTGAGCAC 	33
-------------------------------TTGACAGAAGAGAGTGAGCACA 	1
-------------------------------TTGACAGAAGAGAGTGAGCA 	82
-------------------------------TTGACAGAAGAGAGTGAGCAC 	6380
-------------------------------TTGACAGAAGAGAGTGAGC 	38
--------------------------------TGACAGAAGAGAGTGAGCACA 	39
--------------------------------TGACAGAAGAGAGTGAGCAC 	2443
--------------------------------TGACAGAAGAGAGTGAGCA 	33
---------------------------------GACAGAAGAGAGTGAGCACA 	23
---------------------------------GACAGAAGAGAGTGAGCAC 	11
----------------------------------ACAGAAGAGAGTGAGCACA 	2
----------------------------------------------------ACGGCGTGATGGCCGGCATAAAA 	1
-----------------------------------------------------------------------------------------------TGCTCACTCCTCTTTCTGTCACC 	1
------------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACC 	25
------------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCAC 	4
------------------------------------------------------------------------------------------------GCTCACTCCTCTTTCTGTCACCC 	7


Overlaps with: MNEST041907 MNEST048804
Overlaps with miRBase pre-miRNAs: osa-MIR156d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
102 Oryza sativa GSM520639-18678 TGACAGAAGAGAGTGAGCAC GCTCACTCTCTATCTGTCAGC up 0 1


Secondary structure

TCAGTTAATTTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTA
--------------------------------------------------CTGACAGAAGAGAGTGAGCAC 	15
---------------------------------------------------TGACAGAAGAGAGTGAGCACA 	39
---------------------------------------------------TGACAGAAGAGAGTGAGCAC 	2443
---------------------------------------------------TGACAGAAGAGAGTGAGCA 	33
----------------------------------------------------GACAGAAGAGAGTGAGCACA 	23
----------------------------------------------------GACAGAAGAGAGTGAGCAC 	11
-----------------------------------------------------ACAGAAGAGAGTGAGCACA 	2
----------------------------------------------------------------------------------------------------------------------GCTCACTCTCTATCTGTCAGC 	7


Overlaps with: MNEST049442
Overlaps with miRBase pre-miRNAs: osa-MIR156b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
103 Oryza sativa GSM520639-18678 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCAGC up 0 2


Secondary structure

TTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCC
------------------------------CTGACAGAAGAGAGTGAGCAC 	15
-------------------------------TGACAGAAGAGAGTGAGCACA 	39
-------------------------------TGACAGAAGAGAGTGAGCAC 	2443
-------------------------------TGACAGAAGAGAGTGAGCA 	33
--------------------------------GACAGAAGAGAGTGAGCACA 	23
--------------------------------GACAGAAGAGAGTGAGCAC 	11
---------------------------------ACAGAAGAGAGTGAGCACA 	2
------------------------------------------------------------------------------------------------------GCTCACTTCTCTCTCTGTCAGC 	33



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
104 Oryza sativa GSM520639-18678 TGACAGAAGAGAGTGAGCAC GCTCACTTCTCTCTCTGTCACC up 0 2


Secondary structure

TACTAGGAGGGTGACAGAAGAGAGTGAGCACACGTGGTTGTTTCCTTGCATAAATGATGCCTATGCTTGGAGCTACGCGTGCTCACTTCTCTCTCTGTCACCTCCACCCC
----------GTGACAGAAGAGAGTGAGCAC 	2
-----------TGACAGAAGAGAGTGAGCACA 	39
-----------TGACAGAAGAGAGTGAGCAC 	2443
-----------TGACAGAAGAGAGTGAGCA 	33
------------GACAGAAGAGAGTGAGCACA 	23
------------GACAGAAGAGAGTGAGCAC 	11
-------------ACAGAAGAGAGTGAGCACA 	2


Overlaps with: MNEST041904 MNEST048801 MNEST049326
Overlaps with miRBase pre-miRNAs: osa-MIR156a
HuntMi prediction: true miRNA