miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
192Arabidopsis thalianaAAACGACGTCGTTTCGTTCTalignmentplotGSM278335-4060AT5G64700.1 cdna:known chromosome:TAIR10:5:25865172:25866927:-1 gene:AT5G64700 transcript:AT5G64700.1011240.02443.5
5'     AAACGACGTCGTTT-CGTTCT        3'
       | |||||o|||||| | ||||
3' AACGTGTGCTGTAGCAAAAGGAAGACATTTAG 5'
195Arabidopsis thalianaAAACGACGTCGTTTCGTTCTalignmentplotGSM278335-4060AT4G11080.1 cdna:known chromosome:TAIR10:4:6760867:6763272:-1 gene:AT4G11080 transcript:AT4G11080.121200.01442.5
5'     AAACGACGTCGTTTCGTTCT         3'
       ||||||| ||||||| |||o
3' AGAGTTTGCTGAAGCAAAGAAAGGGGAACAGA 5'
381Arabidopsis thalianaAAACGACGTCGTTTCGTTCTalignmentplotGSM278370-4061AT1G75750.1 cdna:known chromosome:TAIR10:1:28441526:28442367:-1 gene:AT1G75750 transcript:AT1G75750.124190.0273.53
5'     AAACGACGTCGTTTCGTTCT         3'
       |||||||o||||oo|o|| |
3' TTGTTTTGCTGTAGCAGGGTAATAGGCGTCGT 5'
415Arabidopsis thalianaAAACGACGTCGTTTCGTTCTalignmentplotGSM278370-4061AT5G61400.1 cdna:known chromosome:TAIR10:5:24681550:24683514:1 gene:AT5G61400 transcript:AT5G61400.116750.03444
5'     AAACGACGTCGTTTCGTTCT         3'
        |||||||||o||||o| |
3' AGGGATTGCTGCAGTAAAGTA-GTTCTTCAAA 5'
474Arabidopsis thalianaAAACGACGTCGTTTCGTTCTalignmentplotGSM278370-4061AT3G24500.1 cdna:known chromosome:TAIR10:3:8918679:8919308:1 gene:AT3G24500 transcript:AT3G24500.125300.04423.5
5'     AAACGACGTCGTTTCGTTCT         3'
       |||||||o|||||| o|o |
3' TCTATTTGCTGTAGCAAATTAGTAAAGGGTTA 5'
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