miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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6 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1357Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S159_13V6.1 cdna:known scaffold:ASM242v1:DS545048.1:86215:89324:1 gene:PP1S159_13V6 transcript:PP1S159_13V6.1024720.014044043.5
5'     ACACTCTCTCCATTTCTCTGC        3'
        ||||||||||||||||| o
3' GTTAAGTGAGAGAGGTAAAGAGTTTGACTTAC 5'
1381Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S49_283V6.1 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.125340.0520.6666672.5
5'     ACACTCTCTCCATTTCTCTGC        3'
        |||||||||||o|||||| |
3' CACAAGTGAGAGAGGTGAAGAGA-GCGACAAT 5'
1411Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S13_145V6.1 cdna:known scaffold:ASM242v1:DS544902.1:1046333:1048755:1 gene:PP1S13_145V6 transcript:PP1S13_145V6.101833030302.5
5'     ACACTCTCTCCATTTCTC-TGC       3'
        ||||||||||||o|||| |||
3' GTGAAGTGAGAGAGGTAGAGAGTACGACTTGT 5'
1420Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S49_283V6.2 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.224400.0420.6666672.5
5'     ACACTCTCTCCATTTCTCTGC        3'
        |||||||||||o|||||| |
3' CACAAGTGAGAGAGGTGAAGAGA-GCGAGCAA 5'
1445Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S49_283V6.3 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.324470.0420.6666672.5
5'     ACACTCTCTCCATTTCTCTGC        3'
        |||||||||||o|||||| |
3' CACAAGTGAGAGAGGTGAAGAGA-GCGACAAT 5'
1448Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S4_174V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1238882:1242329:-1 gene:PP1S4_174V6 transcript:PP1S4_174V6.1018340.01688668863
5'     ACACTCTCTCCATTTCTCTGC        3'
        |||||||||| |||| ||||
3' AAGTAGTGAGAGAGGCAAAG-GACGGGGAACA 5'
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