miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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3 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
40Arabidopsis thalianaACCATCAATTCATCGTGGCCGalignmentplotGSM278334-4059AT3G18760.2 cdna:known chromosome:TAIR10:3:6457690:6459627:-1 gene:AT3G18760 transcript:AT3G18760.225600.04214
5'     ACCATCAATTCATCGTGGCCG        3'
       ||||o|| ||||| ||oo||o
3' CGTATGGTGGTGAAGTA-CATTGGTTTTTGTA 5'
212Arabidopsis thalianaACCATCAATTCATCGTGGCCGalignmentplotGSM278335-4060AT4G18120.1 cdna:known chromosome:TAIR10:4:10038126:10042248:1 gene:AT4G18120 transcript:AT4G18120.1026080178.54
5'     ACCATCAATTCATCGTGGCCG        3'
       |||||||||||| |o|| | o
3' GTGTTGGTAGTTAAGT-GTACAGATCTTGTTA 5'
406Arabidopsis thalianaACCATCAATTCATCGTGGCCGalignmentplotGSM278370-4061AT4G18120.1 cdna:known chromosome:TAIR10:4:10038126:10042248:1 gene:AT4G18120 transcript:AT4G18120.10260802110.54
5'     ACCATCAATTCATCGTGGCCG        3'
       |||||||||||| |o|| | o
3' GTGTTGGTAGTTAAGT-GTACAGATCTTGTTA 5'
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