miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


3 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
310Arabidopsis thalianaACTCGACCACGAAGTCGAGTalignmentplotGSM278335-4060AT4G01320.1 cdna:known chromosome:TAIR10:4:545796:549261:1 gene:AT4G01320 transcript:AT4G01320.125060.0213133
5'     ACTCGACCACGAA-GTCGAGT        3'
       |||||| |||||| || ||||
3' GCTCTGAGCTAGTGCTTTCAACTCATGTTTCT 5'
388Arabidopsis thalianaACTCGACCACGAAGTCGAGTalignmentplotGSM278370-4061AT1G13440.2 cdna:known chromosome:TAIR10:1:4608196:4610647:-1 gene:AT1G13440 transcript:AT1G13440.224480.03623.5
5'     ACTCGACCACGAAGTCGAGT         3'
       ||||o|| ||o||||| ||o
3' CATCTGAGTTGTTGTTTCAG-TCGAGGTCGGA 5'
485Arabidopsis thalianaACTCGACCACGAAGTCGAGTalignmentplotGSM278370-4061AT4G01320.1 cdna:known chromosome:TAIR10:4:545796:549261:1 gene:AT4G01320 transcript:AT4G01320.10506029293
5'     ACTCGACCACGAA-GTCGAGT        3'
       |||||| |||||| || ||||
3' GCTCTGAGCTAGTGCTTTCAACTCATGTTTCT 5'
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