miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


22 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1487Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.101252046462.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5'
1489Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.1217440.02157.52.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5'
1491Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc09g007260.2.1 cdna:novel chromosome:SL2.40:9:856629:859952:1 gene:Solyc09g007260.2 transcript:Solyc09g007260.2.101523025252.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' AATCGCTTAGGACTACTACGACGTCATCTCTT 5'
1500Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc04g049800.2.1 cdna:novel chromosome:SL2.40:4:42714973:42717503:1 gene:Solyc04g049800.2 transcript:Solyc04g049800.2.101117096961.5
5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o|||||||||||||
3' CATCTCTTAGGACTACTACGACGTCTTCTTCT 5'
1517Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc03g044300.2.1 cdna:known chromosome:SL2.40:3:12742062:12746690:1 gene:Solyc03g044300.2 transcript:Solyc03g044300.2.101384011112.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACCCCCTTAGGACTACTACGACGTCGTCAACG 5'
1527Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc06g075510.2.1 cdna:known chromosome:SL2.40:6:43255163:43258759:-1 gene:Solyc06g075510.2 transcript:Solyc06g075510.2.1215220.0110102.5
5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o||||||||||||
3' TACTTCTTAGGACTACTACGACGGCACGTCTT 5'
1528Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc11g072600.1.1 cdna:known chromosome:SL2.40:11:52857365:52860247:-1 gene:Solyc11g072600.1 transcript:Solyc11g072600.1.10128802402401.5
5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o|||||||||||||
3' CAACTCTTAGGACTACTACGACGTCGTCTCTT 5'
1533Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc02g093150.2.1 cdna:known chromosome:SL2.40:2:48655673:48658630:1 gene:Solyc02g093150.2 transcript:Solyc02g093150.2.1215720157.52.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCGATG 5'
1537Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.10174402481242.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5'
1538Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.101252045452.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5'
1542Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc09g007260.2.1 cdna:novel chromosome:SL2.40:9:856629:859952:1 gene:Solyc09g007260.2 transcript:Solyc09g007260.2.101523013132.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' AATCGCTTAGGACTACTACGACGTCATCTCTT 5'
1557Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc04g049800.2.1 cdna:novel chromosome:SL2.40:4:42714973:42717503:1 gene:Solyc04g049800.2 transcript:Solyc04g049800.2.101117012121.5
5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o|||||||||||||
3' CATCTCTTAGGACTACTACGACGTCTTCTTCT 5'
1570Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc03g044300.2.1 cdna:known chromosome:SL2.40:3:12742062:12746690:1 gene:Solyc03g044300.2 transcript:Solyc03g044300.2.10138401781782.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACCCCCTTAGGACTACTACGACGTCGTCAACG 5'
1580Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc11g072600.1.1 cdna:known chromosome:SL2.40:11:52857365:52860247:-1 gene:Solyc11g072600.1 transcript:Solyc11g072600.1.10128801831831.5
5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o|||||||||||||
3' CAACTCTTAGGACTACTACGACGTCGTCTCTT 5'
1582Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc02g093150.2.1 cdna:known chromosome:SL2.40:2:48655673:48658630:1 gene:Solyc02g093150.2 transcript:Solyc02g093150.2.10157202481242.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCGATG 5'
1584Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc06g075510.2.1 cdna:known chromosome:SL2.40:6:43255163:43258759:-1 gene:Solyc06g075510.2 transcript:Solyc06g075510.2.121522010102.5
5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o||||||||||||
3' TACTTCTTAGGACTACTACGACGGCACGTCTT 5'
1590Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.101744044222.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5'
1591Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.101252028282.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5'
1608Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc04g049800.2.1 cdna:novel chromosome:SL2.40:4:42714973:42717503:1 gene:Solyc04g049800.2 transcript:Solyc04g049800.2.101117015151.5
5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o|||||||||||||
3' CATCTCTTAGGACTACTACGACGTCTTCTTCT 5'
1622Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc03g044300.2.1 cdna:known chromosome:SL2.40:3:12742062:12746690:1 gene:Solyc03g044300.2 transcript:Solyc03g044300.2.101384057572.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACCCCCTTAGGACTACTACGACGTCGTCAACG 5'
1633Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc11g072600.1.1 cdna:known chromosome:SL2.40:11:52857365:52860247:-1 gene:Solyc11g072600.1 transcript:Solyc11g072600.1.101288028281.5
5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o|||||||||||||
3' CAACTCTTAGGACTACTACGACGTCGTCTCTT 5'
1634Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc02g093150.2.1 cdna:known chromosome:SL2.40:2:48655673:48658630:1 gene:Solyc02g093150.2 transcript:Solyc02g093150.2.101572044222.5
5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCGATG 5'
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