miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


2 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1403Physcomitrella patensCCACTCTCTCCGTTTCCCTTCCalignmentplotGSM410805-5251PP1S180_108V6.1 cdna:known scaffold:ASM242v1:DS545069.1:700836:702986:-1 gene:PP1S180_108V6 transcript:PP1S180_108V6.1112320.03224
5'     CCACTCTCTCCGTTTCCCTTCC       3'
        |||o||||||o||||||| |
3' GGGTAGTGGGAGAGGTAAAGGGA-GACGTATG 5'
1447Physcomitrella patensCCACTCTCTCCGTTTCCCTTCCalignmentplotGSM410805-5251PP1S4_174V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1238882:1242329:-1 gene:PP1S4_174V6 transcript:PP1S4_174V6.1018340688668863
5'     CCACTCTCTCCGTTTCCCTTCC       3'
        |||||||||||||||| | ||
3' AAGTAGTGAGAGAGGCAAAGG-ACGGGGAACA 5'
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