miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


14 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
41Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT2G11910.2 cdna:known chromosome:TAIR10:2:4805684:4807319:-1 gene:AT2G11910 transcript:AT2G11910.225090.0431.53.5
5'     CTATCATCATCATCCTCGTAA        3'
       | ||||||||| |||||o| |
3' TGTAG-TAGTAGTAGAAGGAGTAGTAGCAGAA 5'
72Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT2G30350.2 cdna:known chromosome:TAIR10:2:12934150:12935773:-1 gene:AT2G30350 transcript:AT2G30350.226270.0240.01136363
5'     CTATCATCATCATCCTCGTAA        3'
       | ||||||||||||||| | |
3' AGTAG-TAGTAGTAGTAGGAGAAGTAATTGGA 5'
76Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.121931040.01136362.5
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| ||o|||
3' AGTAG-TAGTAGTAGTAGTAGTATTATTCTTG 5'
78Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1219640.0340.01136362.5
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||||||o| |
3' AGTAG-TAGTAGTAGTAGGAGTAGTGGTAGTA 5'
105Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT5G40520.2 cdna:known chromosome:TAIR10:5:16231254:16234316:-1 gene:AT5G40520 transcript:AT5G40520.2213380.0540.01136363.5
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| ||o| |
3' AGTAG-TAGTAGTAGTAGTAGTAGTAATAGTA 5'
121Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT3G14900.1 cdna:known chromosome:TAIR10:3:5013291:5015292:-1 gene:AT3G14900 transcript:AT3G14900.1213490.0140.01136363
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| |||| |
3' AGTAG-TAGTAGTAGTAGTAGCAGTAACAGTC 5'
200Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT1G60220.1 cdna:known chromosome:TAIR10:1:22208332:22212171:1 gene:AT1G60220 transcript:AT1G60220.107970.03602.857143.5
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| ||o| |
3' AGTAG-TAGTAGTAGTAGTAGTAGTAGTTAGT 5'
238Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1011840.03602.857143.5
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| ||o| |
3' AGTAG-TAGTAGTAGTAGTAGTAGTAGCGTTG 5'
240Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT5G63740.1 cdna:known chromosome:TAIR10:5:25510776:25511456:-1 gene:AT5G63740 transcript:AT5G63740.122720.02190.05762993
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||||||||
3' AGTAG-TAGTAGTAGTAGGAGCAGGAGCAGGA 5'
244Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1211780190.05762992.5
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| |||o||
3' AGTAG-TAGTAGTAGTAGTAGCGTTGGTCCTC 5'
258Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1219640.02190.05762992.5
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||||||o| |
3' AGTAG-TAGTAGTAGTAGGAGTAGTGGTAGTA 5'
259Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1219310.01190.05762992.5
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| ||o|||
3' AGTAG-TAGTAGTAGTAGTAGTATTATTCTTG 5'
410Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278370-4061AT1G16150.1 cdna:known chromosome:TAIR10:1:5532415:5534877:1 gene:AT1G16150 transcript:AT1G16150.1021980.0430.33.5
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| ||o| |
3' AGTAG-TAGTAGTAGTAGTAGTAGTAGTAGTA 5'
486Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278370-4061AT3G29075.1 cdna:known chromosome:TAIR10:3:11051489:11052694:-1 gene:AT3G29075 transcript:AT3G29075.127840.022043
5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| | ||||
3' AAGAG-TAGTAGTAGTAGTAACATTAATACGA 5'
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