miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


4 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1530Solanum lycopersicumCTGAAGTGTTTGGGGGAACTCCalignmentplotGSM553688-9229Solyc06g048510.2.1 cdna:novel chromosome:SL2.40:6:27661455:27665948:1 gene:Solyc06g048510.2 transcript:Solyc06g048510.2.121080010103.5
5'     CTGAAGTGTTT-GGGGGAACTCC      3'
       ||o||||o||| || o|||||||
3' TCTCGATTTCATAAAACCGTCTTGAGGAAAGT 5'
1585Solanum lycopersicumCTGAAGTGTTTGGGGGAACTCCalignmentplotGSM553689-9230Solyc09g082860.2.1 cdna:novel chromosome:SL2.40:9:63941988:63946072:1 gene:Solyc09g082860.2 transcript:Solyc09g082860.2.124880.0111113.5
5'     CTGAAGTGTTTGGGGGAACTCC       3'
        ||||| ||||||o|||||||
3' ACTTTACTTCTCAAACCTCCTTGAGCCTAAGA 5'
1604Solanum lycopersicumCTGAAGTGTTTGGGGGAACTCCalignmentplotGSM553690-9231Solyc04g054730.2.1 cdna:novel chromosome:SL2.40:4:52246216:52251232:-1 gene:Solyc04g054730.2 transcript:Solyc04g054730.2.11311011113.5
5'     CTGAAGTGTTTGGGGGAACTCC       3'
        |||||||||||||o|||| |
3' CACAAACTTCACAAACCCTCTTGTGTCTTTCA 5'
1630Solanum lycopersicumCTGAAGTGTTTGGGGGAACTCCalignmentplotGSM553690-9231Solyc09g082860.2.1 cdna:novel chromosome:SL2.40:9:63941988:63946072:1 gene:Solyc09g082860.2 transcript:Solyc09g082860.2.114880773.5
5'     CTGAAGTGTTTGGGGGAACTCC       3'
        ||||| ||||||o|||||||
3' ACTTTACTTCTCAAACCTCCTTGAGCCTAAGA 5'
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